IL_9ROT_027

3D structure

PDB id

9ROT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome small subunit bound to METTL15, RBFA, and mtIF2 (State M2.1)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GGC*GUAC

Length

7 nucleotides

Bulged bases

9ROT|1|A|A|1478

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9ROT_027 not in the Motif Atlas

Geometric match to IL_4PKD_001

Geometric discrepancy: 0.3079

The information below is about IL_4PKD_001

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_30722.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

20

Unit IDs

9ROT|1|A|G|1175
9ROT|1|A|G|1176
9ROT|1|A|C|1177
*
9ROT|1|A|G|1476
9ROT|1|A|U|1477
9ROT|1|A|A|1478
9ROT|1|A|C|1479

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 3

Aurora kinase A-interacting protein

Chain D

28S ribosomal protein S5, mitochondrial