IL_9ROV_014

3D structure

PDB id

9ROV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome small subunit bound to METTL15 and RBFA (Inward conformation) (State M2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGCCAG*CGGUCACAC

Length

16 nucleotides

Bulged bases

9ROV|1|A|C|904, 9ROV|1|A|C|906, 9ROV|1|A|A|907

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9ROV_014 not in the Motif Atlas

Homologous match to IL_6CZR_133

Geometric discrepancy: 0.3692

The information below is about IL_6CZR_133

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.3

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9ROV|1|A|G|887
9ROV|1|A|U|888
9ROV|1|A|G|889
9ROV|1|A|C|890
9ROV|1|A|C|891
9ROV|1|A|A|892
9ROV|1|A|G|893
*
9ROV|1|A|C|900
9ROV|1|A|G|901
9ROV|1|A|G|902
9ROV|1|A|U|903
9ROV|1|A|C|904
9ROV|1|A|A|905
9ROV|1|A|C|906
9ROV|1|A|A|907
9ROV|1|A|C|908

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain D

28S ribosomal protein S5, mitochondrial

Chain J

28S ribosomal protein S12, mitochondrial

Chain a

Putative ribosome-binding factor A, mitochondrial