IL_9RPV_088
3D structure
- PDB id
- 9RPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the ZAK-bound human disome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.35 Å
Loop
- Sequence
- GUAGUAG*CGAAAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9RPV_088 not in the Motif Atlas
- Homologous match to IL_8GLP_300
- Geometric discrepancy: 0.053
- The information below is about IL_8GLP_300
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_02666.4
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 19
Unit IDs
9RPV|1|L5|G|2358
9RPV|1|L5|U|2359
9RPV|1|L5|A|2360
9RPV|1|L5|G|2361
9RPV|1|L5|U|2362
9RPV|1|L5|A|2363
9RPV|1|L5|G|2364
*
9RPV|1|L5|C|3858
9RPV|1|L5|G|3859
9RPV|1|L5|A|3860
9RPV|1|L5|A|3861
9RPV|1|L5|A|3862
9RPV|1|L5|C|3863
Current chains
- Chain L5
- 28S rRNA of the collided 80S
Nearby chains
- Chain LC
- 60S ribosomal protein L4
- Chain LP
- 60S ribosomal protein L17
Coloring options: