IL_9RPV_175
3D structure
- PDB id
- 9RPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the ZAK-bound human disome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.35 Å
Loop
- Sequence
- CUGAAUUU*AUUAGUCAG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9RPV_175 not in the Motif Atlas
- Homologous match to IL_8GLP_005
- Geometric discrepancy: 0.0475
- The information below is about IL_8GLP_005
- Detailed Annotation
- 9x8 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_93502.4
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 8
Unit IDs
9RPV|1|M5|C|30
9RPV|1|M5|U|31
9RPV|1|M5|G|32
9RPV|1|M5|A|33
9RPV|1|M5|A|34
9RPV|1|M5|U|35
9RPV|1|M5|U|36
9RPV|1|M5|U|37
*
9RPV|1|M5|A|44
9RPV|1|M5|U|45
9RPV|1|M5|U|46
9RPV|1|M5|A|47
9RPV|1|M5|G|48
9RPV|1|M5|U|49
9RPV|1|M5|C|50
9RPV|1|M5|A|51
9RPV|1|M5|G|52
Current chains
- Chain M5
- 28S rRNA of the stalled 80S
Nearby chains
- Chain ML
- Large ribosomal subunit protein eL13
- Chain MN
- 60S ribosomal protein L15
- Chain Ma
- Large ribosomal subunit protein uL15
- Chain Mj
- Large ribosomal subunit protein eL37
- Chain Mo
- Large ribosomal subunit protein eL42
Coloring options: