IL_9RPV_180

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

9RPV|1|M5|C|143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RPV_180 not in the Motif Atlas

Homologous match to IL_8GLP_009

Geometric discrepancy: 0.0936

The information below is about IL_8GLP_009

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

72

Unit IDs

9RPV|1|M5|C|125
9RPV|1|M5|C|126
*
9RPV|1|M5|G|142
9RPV|1|M5|C|143
9RPV|1|M5|G|144

Current chains

Chain M5

28S rRNA of the stalled 80S

Nearby chains

Chain M8

5.8S ribosomal RNA; 5.8S rRNA

Chain MG

60S ribosomal protein L7a

Chain MN

60S ribosomal protein L15

Chain MX

60S ribosomal protein L23a

Chain Mh

60S ribosomal protein L35