IL_9RPV_207

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GCG*CCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RPV_207 not in the Motif Atlas

Homologous match to IL_8GLP_039

Geometric discrepancy: 0.1654

The information below is about IL_8GLP_039

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9RPV|1|M5|G|740
9RPV|1|M5|C|741
9RPV|1|M5|G|742
*
9RPV|1|M5|C|922
9RPV|1|M5|C|923
9RPV|1|M5|C|924

Current chains

Chain M5

28S rRNA of the stalled 80S

Nearby chains

Chain MM

60S ribosomal protein L14

Chain MS

60S ribosomal protein L18a