IL_9RPV_223

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CC(OMG)*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RPV_223 not in the Motif Atlas

Homologous match to IL_9AXU_025

Geometric discrepancy: 0.0714

The information below is about IL_9AXU_025

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9RPV|1|M5|C|1520
9RPV|1|M5|C|1521
9RPV|1|M5|OMG|1522
*
9RPV|1|M5|C|1655
9RPV|1|M5|U|1656
9RPV|1|M5|G|1657

Current chains

Chain M5

28S rRNA of the stalled 80S

Nearby chains

Chain MC

60S ribosomal protein L4

Chain Ma

Large ribosomal subunit protein uL15