IL_9RPV_248

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CUCAUCAG*CUGGAG

Length

14 nucleotides

Bulged bases

9RPV|1|M5|U|1930, 9RPV|1|M5|C|1931, 9RPV|1|M5|G|2055, 9RPV|1|M5|A|2057

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RPV|1|M5|C|1926
9RPV|1|M5|U|1927
9RPV|1|M5|C|1928
9RPV|1|M5|A|1929
9RPV|1|M5|U|1930
9RPV|1|M5|C|1931
9RPV|1|M5|A|1932
9RPV|1|M5|G|1933
*
9RPV|1|M5|C|2053
9RPV|1|M5|U|2054
9RPV|1|M5|G|2055
9RPV|1|M5|G|2056
9RPV|1|M5|A|2057
9RPV|1|M5|G|2058

Current chains

Chain M5

28S rRNA of the stalled 80S

Nearby chains

Chain MH

60S ribosomal protein L9

Chain MM

60S ribosomal protein L14

Chain MO

60S ribosomal protein L13a

Chain MS

60S ribosomal protein L18a

Chain Mm

Ubiquitin-ribosomal protein eL40 fusion protein