IL_9RPV_292

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

(OMG)AG*UUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RPV_292 not in the Motif Atlas

Homologous match to IL_8GLP_308

Geometric discrepancy: 0.1287

The information below is about IL_8GLP_308

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.5

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

67

Unit IDs

9RPV|1|M5|OMG|3944
9RPV|1|M5|A|3945
9RPV|1|M5|G|3946
*
9RPV|1|M5|U|4067
9RPV|1|M5|U|4068
9RPV|1|M5|U|4069

Current chains

Chain M5

28S rRNA of the stalled 80S

Nearby chains

Chain Mi

60S ribosomal protein L36

Chain RB

40S ribosomal protein S3a