IL_9RPV_314

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CUCAGUAC*GGAACCG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RPV_314 not in the Motif Atlas

Homologous match to IL_8GLP_159

Geometric discrepancy: 0.0525

The information below is about IL_8GLP_159

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_34443.2

Basepair signature

cWW-L-R-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

4

Unit IDs

9RPV|1|M5|C|4596
9RPV|1|M5|U|4597
9RPV|1|M5|C|4598
9RPV|1|M5|A|4599
9RPV|1|M5|G|4600
9RPV|1|M5|U|4601
9RPV|1|M5|A|4602
9RPV|1|M5|C|4603
*
9RPV|1|M5|G|4608
9RPV|1|M5|G|4609
9RPV|1|M5|A|4610
9RPV|1|M5|A|4611
9RPV|1|M5|C|4612
9RPV|1|M5|C|4613
9RPV|1|M5|G|4614

Current chains

Chain M5

28S rRNA of the stalled 80S

Nearby chains

Chain MB

Large ribosomal subunit protein uL3

Chain MH

60S ribosomal protein L9

Chain MV

60S ribosomal protein L23

Chain Mm

Ubiquitin-ribosomal protein eL40 fusion protein