IL_9RPV_316
3D structure
- PDB id
- 9RPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the ZAK-bound human disome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.35 Å
Loop
- Sequence
- UGUA(PSU)(OMG)*CGAAG
- Length
- 11 nucleotides
- Bulged bases
- 9RPV|1|M5|U|4634, 9RPV|1|M5|PSU|4636
- QA status
- Modified nucleotides: PSU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9RPV_316 not in the Motif Atlas
- Homologous match to IL_8GLP_318
- Geometric discrepancy: 0.1944
- The information below is about IL_8GLP_318
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_43276.1
- Basepair signature
- cWW-L-R-tHW-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
9RPV|1|M5|U|4632
9RPV|1|M5|G|4633
9RPV|1|M5|U|4634
9RPV|1|M5|A|4635
9RPV|1|M5|PSU|4636
9RPV|1|M5|OMG|4637
*
9RPV|1|M5|C|4662
9RPV|1|M5|G|4663
9RPV|1|M5|A|4664
9RPV|1|M5|A|4665
9RPV|1|M5|G|4666
Current chains
- Chain M5
- 28S rRNA of the stalled 80S
Nearby chains
- Chain MB
- Large ribosomal subunit protein uL3
- Chain MW
- 60S ribosomal protein L24
- Chain Md
- 60S ribosomal protein L31
Coloring options: