IL_9RPV_316

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

UGUA(PSU)(OMG)*CGAAG

Length

11 nucleotides

Bulged bases

9RPV|1|M5|U|4634, 9RPV|1|M5|PSU|4636

QA status

Modified nucleotides: PSU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RPV|1|M5|U|4632
9RPV|1|M5|G|4633
9RPV|1|M5|U|4634
9RPV|1|M5|A|4635
9RPV|1|M5|PSU|4636
9RPV|1|M5|OMG|4637
*
9RPV|1|M5|C|4662
9RPV|1|M5|G|4663
9RPV|1|M5|A|4664
9RPV|1|M5|A|4665
9RPV|1|M5|G|4666

Current chains

Chain M5

28S rRNA of the stalled 80S

Nearby chains

Chain MB

Large ribosomal subunit protein uL3

Chain MW

60S ribosomal protein L24

Chain Md

60S ribosomal protein L31