IL_9RPV_328

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GGG*CAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RPV_328 not in the Motif Atlas

Homologous match to IL_8GLP_173

Geometric discrepancy: 0.0583

The information below is about IL_8GLP_173

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9RPV|1|M5|G|4992
9RPV|1|M5|G|4993
9RPV|1|M5|G|4994
*
9RPV|1|M5|C|5057
9RPV|1|M5|A|5058
9RPV|1|M5|C|5059

Current chains

Chain M5

28S rRNA of the stalled 80S

Nearby chains

Chain MB

Large ribosomal subunit protein uL3

Chain Md

60S ribosomal protein L31