IL_9RPV_378

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GAG*CGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RPV_378 not in the Motif Atlas

Geometric match to IL_9PN5_067

Geometric discrepancy: 0.2509

The information below is about IL_9PN5_067

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9RPV|1|S2|G|692
9RPV|1|S2|A|693
9RPV|1|S2|G|694
*
9RPV|1|S2|C|736
9RPV|1|S2|G|737
9RPV|1|S2|C|738

Current chains

Chain S2

18S rRNA of the collided 80S

Nearby chains

Chain SH

40S ribosomal protein S7

Chain SW

40S ribosomal protein S15a