IL_9RPV_382

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

UCUC*GA

Length

6 nucleotides

Bulged bases

9RPV|1|S2|U|749

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RPV_382 not in the Motif Atlas

Geometric match to IL_9H3G_045

Geometric discrepancy: 0.3695

The information below is about IL_9H3G_045

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_37129.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

57

Unit IDs

9RPV|1|S2|U|747
9RPV|1|S2|C|748
9RPV|1|S2|U|749
9RPV|1|S2|C|750
*
9RPV|1|S2|G|793
9RPV|1|S2|A|794

Current chains

Chain S2

18S rRNA of the collided 80S

Nearby chains

Chain SE

Small ribosomal subunit protein eS4, X isoform