IL_9RPV_447

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

UAU*ACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RPV_447 not in the Motif Atlas

Geometric match to IL_8GLP_197

Geometric discrepancy: 0.0629

The information below is about IL_8GLP_197

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9RPV|1|S3|U|110
9RPV|1|S3|A|111
9RPV|1|S3|U|112
*
9RPV|1|S3|A|349
9RPV|1|S3|C|350
9RPV|1|S3|G|351

Current chains

Chain S3

18S rRNA of the stalled 80S

Nearby chains

Chain RE

Small ribosomal subunit protein eS4, X isoform

Chain RI

40S ribosomal protein S8

Chain RL

40S ribosomal protein S11