IL_9RPV_456

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CACG*CGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RPV_456 not in the Motif Atlas

Homologous match to IL_9PN5_157

Geometric discrepancy: 0.2113

The information below is about IL_9PN5_157

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77718.1

Basepair signature

cWW-L-cSW-cWW

Number of instances in this motif group

11

Unit IDs

9RPV|1|S3|C|317
9RPV|1|S3|A|318
9RPV|1|S3|C|319
9RPV|1|S3|G|320
*
9RPV|1|S3|C|331
9RPV|1|S3|G|332
9RPV|1|S3|G|333

Current chains

Chain S3

18S rRNA of the stalled 80S

Nearby chains

Chain MW

60S ribosomal protein L24

Chain RG

40S ribosomal protein S6