IL_9RPV_462

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CAU*(A2M)AG

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RPV_462 not in the Motif Atlas

Homologous match to IL_9H3G_177

Geometric discrepancy: 0.1079

The information below is about IL_9H3G_177

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_19025.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

9RPV|1|S3|C|459
9RPV|1|S3|A|460
9RPV|1|S3|U|461
*
9RPV|1|S3|A2M|468
9RPV|1|S3|A|469
9RPV|1|S3|G|470

Current chains

Chain S3

18S rRNA of the stalled 80S

Nearby chains

Chain MV

60S ribosomal protein L23

Chain RG

40S ribosomal protein S6