IL_9RPV_467

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GACU*AGGCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RPV_467 not in the Motif Atlas

Geometric match to IL_8GLP_328

Geometric discrepancy: 0.2526

The information below is about IL_8GLP_328

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20358.1

Basepair signature

cWW-L-R-L-cWW-cWW

Number of instances in this motif group

2

Unit IDs

9RPV|1|S3|G|535
9RPV|1|S3|A|536
9RPV|1|S3|C|537
9RPV|1|S3|U|538
*
9RPV|1|S3|A|545
9RPV|1|S3|G|546
9RPV|1|S3|G|547
9RPV|1|S3|C|548
9RPV|1|S3|C|549

Current chains

Chain S3

18S rRNA of the stalled 80S

Nearby chains

Chain Re

Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein