IL_9RPV_469

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

UCCA*UUAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RPV_469 not in the Motif Atlas

Geometric match to IL_8GLP_220

Geometric discrepancy: 0.1029

The information below is about IL_8GLP_220

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.5

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

43

Unit IDs

9RPV|1|S3|U|566
9RPV|1|S3|C|567
9RPV|1|S3|C|568
9RPV|1|S3|A|569
*
9RPV|1|S3|U|581
9RPV|1|S3|U|582
9RPV|1|S3|A|583
9RPV|1|S3|A|584

Current chains

Chain S3

18S rRNA of the stalled 80S

Nearby chains

Chain RJ

40S ribosomal protein S9

Chain RY

40S ribosomal protein S24