IL_9RPV_493

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RPV_493 not in the Motif Atlas

Geometric match to IL_8GLP_246

Geometric discrepancy: 0.0522

The information below is about IL_8GLP_246

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_26092.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

29

Unit IDs

9RPV|1|S3|G|1108
9RPV|1|S3|C|1109
9RPV|1|S3|G|1110
*
9RPV|1|S3|C|1123
9RPV|1|S3|C|1124

Current chains

Chain S3

18S rRNA of the stalled 80S

Nearby chains

Chain RA

Small ribosomal subunit protein uS2

Chain RB

40S ribosomal protein S3a

Chain RR

40S ribosomal protein S17

Chain Rb

40S ribosomal protein S27