IL_9RPV_511

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

ACUA*U(OMU)CU

Length

8 nucleotides

Bulged bases

9RPV|1|S3|C|1403, 9RPV|1|S3|U|1404

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RPV_511 not in the Motif Atlas

Homologous match to IL_9PN5_213

Geometric discrepancy: 0.152

The information below is about IL_9PN5_213

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_78800.5

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

5

Unit IDs

9RPV|1|S3|A|1402
9RPV|1|S3|C|1403
9RPV|1|S3|U|1404
9RPV|1|S3|A|1405
*
9RPV|1|S3|U|1441
9RPV|1|S3|OMU|1442
9RPV|1|S3|C|1443
9RPV|1|S3|U|1444

Current chains

Chain S3

18S rRNA of the stalled 80S

Nearby chains

Chain RQ

40S ribosomal protein S16

Chain RU

40S ribosomal protein S20

Chain Rg

Receptor of activated protein C kinase 1