IL_9RPV_524

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

UAC*GAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RPV_524 not in the Motif Atlas

Homologous match to IL_9PN5_224

Geometric discrepancy: 0.0796

The information below is about IL_9PN5_224

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9RPV|1|S3|U|1714
9RPV|1|S3|A|1715
9RPV|1|S3|C|1716
*
9RPV|1|S3|G|1817
9RPV|1|S3|A|1818
9RPV|1|S3|A|1819

Current chains

Chain S3

18S rRNA of the stalled 80S

Nearby chains

Chain M5

Large subunit ribosomal RNA; LSU rRNA

Chain Mn

60S ribosomal protein L41

Chain RX

40S ribosomal protein S23