IL_9RTU_101

3D structure

PDB id

9RTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G(P610L)-GDP-Pi ribosome complex with tRNAs in hybrid state 1 (H1-EF-G(P610L)-GDP-Pi)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGUUC*GGUAG

Length

10 nucleotides

Bulged bases

9RTU|1|A|U|2689, 9RTU|1|A|U|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RTU_101 not in the Motif Atlas

Geometric match to IL_8B0X_163

Geometric discrepancy: 0.0619

The information below is about IL_8B0X_163

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82016.1

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

9RTU|1|A|U|2687
9RTU|1|A|G|2688
9RTU|1|A|U|2689
9RTU|1|A|U|2690
9RTU|1|A|C|2691
*
9RTU|1|A|G|2718
9RTU|1|A|G|2719
9RTU|1|A|U|2720
9RTU|1|A|A|2721
9RTU|1|A|G|2722

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain N

50S ribosomal protein L17

Chain P

50S ribosomal protein L19