IL_9RTU_124

3D structure

PDB id

9RTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G(P610L)-GDP-Pi ribosome complex with tRNAs in hybrid state 1 (H1-EF-G(P610L)-GDP-Pi)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

9RTU|1|a|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RTU_124 not in the Motif Atlas

Geometric match to IL_8B0X_012

Geometric discrepancy: 0.1365

The information below is about IL_8B0X_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24485.1

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

4

Unit IDs

9RTU|1|a|G|147
9RTU|1|a|G|148
9RTU|1|a|A|149
9RTU|1|a|U|150
9RTU|1|a|A|151
9RTU|1|a|A|152
9RTU|1|a|C|153
*
9RTU|1|a|G|168
9RTU|1|a|C|169
9RTU|1|a|U|170
9RTU|1|a|A|171
9RTU|1|a|A|172
9RTU|1|a|U|173
9RTU|1|a|A|174
9RTU|1|a|C|175

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20