IL_9RTU_155

3D structure

PDB id

9RTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G(P610L)-GDP-Pi ribosome complex with tRNAs in hybrid state 1 (H1-EF-G(P610L)-GDP-Pi)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

9RTU|1|a|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RTU_155 not in the Motif Atlas

Geometric match to IL_4LFB_037

Geometric discrepancy: 0.1095

The information below is about IL_4LFB_037

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_61370.1

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

9RTU|1|a|G|933
9RTU|1|a|C|934
9RTU|1|a|A|935
*
9RTU|1|a|U|1380
9RTU|1|a|U|1381
9RTU|1|a|C|1382
9RTU|1|a|C|1383
9RTU|1|a|C|1384

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain g

30S ribosomal protein S7

Chain i

30S ribosomal protein S9

Chain v

Transfer RNA; tRNA