IL_9RTV_048

3D structure

PDB id

9RTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G(P610L)-GDP-Pi ribosome complex with tRNAs in hybrid state 2 (H2-EF-G(P610L)-GDP-Pi)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RTV_048 not in the Motif Atlas

Homologous match to IL_7A0S_049

Geometric discrepancy: 0.2233

The information below is about IL_7A0S_049

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

9RTV|1|A|C|1357
9RTV|1|A|G|1358
9RTV|1|A|A|1359
9RTV|1|A|G|1360
9RTV|1|A|G|1361
*
9RTV|1|A|C|1370
9RTV|1|A|G|1371
9RTV|1|A|U|1372
9RTV|1|A|A|1373
9RTV|1|A|G|1374

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34

Chain C

50S ribosomal protein L2

Chain X

50S ribosomal protein L28