IL_9RTV_069

3D structure

PDB id

9RTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G(P610L)-GDP-Pi ribosome complex with tRNAs in hybrid state 2 (H2-EF-G(P610L)-GDP-Pi)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

9RTV|1|A|A|1801, 9RTV|1|A|C|1816, 9RTV|1|A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RTV_069 not in the Motif Atlas

Homologous match to IL_7A0S_065

Geometric discrepancy: 0.1041

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

9RTV|1|A|U|1798
9RTV|1|A|G|1799
9RTV|1|A|C|1800
9RTV|1|A|A|1801
9RTV|1|A|A|1802
9RTV|1|A|A|1803
9RTV|1|A|C|1804
*
9RTV|1|A|G|1813
9RTV|1|A|G|1814
9RTV|1|A|A|1815
9RTV|1|A|C|1816
9RTV|1|A|G|1817
9RTV|1|A|U|1818
9RTV|1|A|A|1819
9RTV|1|A|U|1820
9RTV|1|A|A|1821

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA