IL_9RTV_133

3D structure

PDB id

9RTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G(P610L)-GDP-Pi ribosome complex with tRNAs in hybrid state 2 (H2-EF-G(P610L)-GDP-Pi)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RTV_133 not in the Motif Atlas

Geometric match to IL_8B0X_019

Geometric discrepancy: 0.1205

The information below is about IL_8B0X_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

9RTV|1|a|U|409
9RTV|1|a|G|410
9RTV|1|a|A|411
9RTV|1|a|A|412
9RTV|1|a|G|413
9RTV|1|a|A|414
9RTV|1|a|A|415
9RTV|1|a|G|416
*
9RTV|1|a|U|427
9RTV|1|a|G|428
9RTV|1|a|U|429
9RTV|1|a|A|430
9RTV|1|a|A|431
9RTV|1|a|A|432
9RTV|1|a|G|433

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain d

Small ribosomal subunit protein uS4