IL_9RU6_092

3D structure

PDB id

9RU6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitoribosome bound to TACO1 (Translational activator of COX1), mRNA, A/A-, P/P- and (partial) E/E-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

CG*UCAAG

Length

7 nucleotides

Bulged bases

9RU6|1|AA|C|1330, 9RU6|1|AA|A|1331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RU6_092 not in the Motif Atlas

Homologous match to IL_6CZR_155

Geometric discrepancy: 0.2589

The information below is about IL_6CZR_155

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

9RU6|1|AA|C|1262
9RU6|1|AA|G|1263
*
9RU6|1|AA|U|1329
9RU6|1|AA|C|1330
9RU6|1|AA|A|1331
9RU6|1|AA|A|1332
9RU6|1|AA|G|1333

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain AC

28S ribosomal protein S24, mitochondrial

Chain AD

28S ribosomal protein S5, mitochondrial

Chain AH

28S ribosomal protein S10, mitochondrial

Chain AK

28S ribosomal protein S14, mitochondrial