IL_9RU7_014

3D structure

PDB id

9RU7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT-HEK 80S ribosome bound to Kozak mRNA (WT-Kozak)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAAC*GAGUUCAAGAGGGC

Length

18 nucleotides

Bulged bases

9RU7|1|L5|G|409, 9RU7|1|L5|G|413

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RU7|1|L5|G|387
9RU7|1|L5|A|388
9RU7|1|L5|A|389
9RU7|1|L5|C|390
*
9RU7|1|L5|G|401
9RU7|1|L5|A|402
9RU7|1|L5|G|403
9RU7|1|L5|U|404
9RU7|1|L5|U|405
9RU7|1|L5|C|406
9RU7|1|L5|A|407
9RU7|1|L5|A|408
9RU7|1|L5|G|409
9RU7|1|L5|A|410
9RU7|1|L5|G|411
9RU7|1|L5|G|412
9RU7|1|L5|G|413
9RU7|1|L5|C|414

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LP

Large ribosomal subunit protein uL22

Chain LY

60S ribosomal protein L26

Chain Ll

60S ribosomal protein L39