9RU7 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9RU7_001 | 1/L5/37:44 | No text annotation | homologous HL_8GLP_001 HL_02262.2 | |
| HL_9RU7_002 | 1/L5/68:73 | No text annotation | homologous HL_9PN5_002 HL_23875.2 | |
| HL_9RU7_003 | 1/L5/89:95 | No text annotation | homologous HL_8GLP_003 HL_76371.5 | |
| HL_9RU7_004 | 1/L5/204:211 | No text annotation | homologous HL_8GLP_005 HL_13999.6 | |
| HL_9RU7_005 | 1/L5/222:226 | No text annotation | homologous HL_8GLP_006 HL_75660.11 | |
| HL_9RU7_006 | 1/L5/230:238 | No text annotation | homologous HL_8GLP_007 HL_27670.7 | |
| HL_9RU7_007 | 1/L5/289:298 | No text annotation | homologous HL_8GLP_008 HL_63894.5 | |
| HL_9RU7_008 | 1/L5/314:323 | No text annotation | homologous HL_8GLP_009 HL_00911.5 | |
| HL_9RU7_009 | 1/L5/368:373 | No text annotation | homologous HL_8GLP_010 HL_34789.7 | |
| HL_9RU7_010 | 1/L5/393:398 | No text annotation | homologous HL_8GLP_118 HL_34789.7 | |
| HL_9RU7_011 | 1/L5/1317:1326 | No text annotation | homologous HL_9PN5_014 HL_33597.8 | |
| HL_9RU7_012 | 1/L5/1364:1373 | No text annotation | homologous HL_8GLP_120 NA | |
| HL_9RU7_013 | 1/L5/1389:1394 | No text annotation | homologous HL_8GLP_018 HL_34789.7 | |
| HL_9RU7_014 | 1/L5/1436:1448 | No text annotation | homologous HL_8GLP_020 HL_20751.3 | |
| HL_9RU7_015 | 1/L5/1480:1484 | No text annotation | homologous HL_8GLP_021 HL_12111.1 | |
| HL_9RU7_016 | 1/L5/1561:1566 | No text annotation | homologous HL_8GLP_022 HL_34789.7 | |
| HL_9RU7_017 | 1/L5/1593:1602 | No text annotation | homologous HL_8GLP_023 HL_50204.4 | |
| HL_9RU7_018 | 1/L5/1627:1635 | No text annotation | homologous HL_8GLP_024 HL_28253.2 | |
| HL_9RU7_019 | 1/L5/1675:1680 | No text annotation | homologous HL_9PN5_022 HL_27530.4 | |
| HL_9RU7_020 | 1/L5/1864:1870 | No text annotation | homologous HL_8GLP_028 HL_34789.7 | |
| HL_9RU7_021 | 1/L5/1886:1893 | No text annotation | homologous HL_8GLP_029 HL_47171.4 | |
| HL_9RU7_022 | 1/L5/2317:2322 | No text annotation | homologous HL_9AXU_027 HL_34789.7 | |
| HL_9RU7_023 | 1/L5/2376:2384 | T-loop with 2 stacked bulged bases | homologous HL_8GLP_033 HL_33597.8 | |
| HL_9RU7_024 | 1/L5/2420:2426 | No text annotation | homologous HL_8GLP_034 HL_49081.3 | |
| HL_9RU7_025 | 1/L5/2458:2463 | No text annotation | homologous HL_8GLP_035 HL_34789.7 | |
| HL_9RU7_026 | 1/L5/2469:2471 | No text annotation | homologous HL_8GLP_036 NA | |
| HL_9RU7_027 | 1/L5/2523:2532 | No text annotation | homologous HL_9PN5_034 HL_77449.4 | |
| HL_9RU7_028 | 1/L5/2578:2583 | No text annotation | homologous HL_8GLP_040 HL_34789.7 | |
| HL_9RU7_029 | 1/L5/2624:2632 | No text annotation | homologous HL_9PN5_036 HL_22758.4 | |
| HL_9RU7_030 | 1/L5/2664:2670 | No text annotation | homologous HL_8GLP_042 HL_52776.1 | |
| HL_9RU7_031 | 1/L5/2738:2742 | No text annotation | homologous HL_8GLP_044 HL_90436.6 | |
| HL_9RU7_032 | 1/L5/2792:2799 | No text annotation | homologous HL_8GLP_045 HL_28592.5 | |
| HL_9RU7_033 | 1/L5/2810:2816 | No text annotation | homologous HL_9PN5_041 HL_34789.7 | |
| HL_9RU7_034 | 1/L5/2872:2877 | No text annotation | homologous HL_9AXU_040 HL_61337.7 | |
| HL_9RU7_035 | 1/L5/3614:3618 | No text annotation | homologous HL_8GLP_049 NA | |
| HL_9RU7_036 | 1/L5/3639:3649 | No text annotation | homologous HL_9H3G_049 HL_87681.4 | |
| HL_9RU7_037 | 1/L5/3668:3674 | No text annotation | homologous HL_8GLP_051 HL_34789.7 | |
| HL_9RU7_038 | 1/L5/3724:3729 | No text annotation | homologous HL_9PN5_046 HL_34789.7 | |
| HL_9RU7_039 | 1/L5/3757:3767 | No text annotation | homologous HL_9H3G_052 HL_82185.4 | |
| HL_9RU7_040 | 1/L5/3796:3804 | No text annotation | homologous HL_8GLP_054 HL_77449.4 | |
| HL_9RU7_041 | 1/L5/3873:3882 | No text annotation | homologous HL_9PN5_049 HL_78372.4 | |
| HL_9RU7_042 | 1/L5/4193:4201 | LSU P loop | homologous HL_8GLP_059 HL_11974.5 | |
| HL_9RU7_043 | 1/L5/4210:4222 | No text annotation | homologous HL_8GLP_060 HL_02042.4 | |
| HL_9RU7_044 | 1/L5/4250:4258 | No text annotation | homologous HL_8GLP_061 HL_02452.4 | |
| HL_9RU7_045 | 1/L5/4270:4277 | No text annotation | homologous HL_8GLP_062 HL_52651.5 | |
| HL_9RU7_046 | 1/L5/4301:4309 | No text annotation | homologous HL_8GLP_063 HL_15296.4 | |
| HL_9RU7_047 | 1/L5/4321:4326 | No text annotation | homologous HL_9AXU_055 HL_34789.7 | |
| HL_9RU7_048 | 1/L5/4352:4362 | No text annotation | homologous HL_8GLP_065 HL_14856.1 | |
| HL_9RU7_049 | 1/L5/4417:4425 | No text annotation | homologous HL_9PN5_059 HL_52011.4 | |
| HL_9RU7_050 | 1/L5/4474:4481 | No text annotation | homologous HL_9PN5_060 HL_02262.2 | |
| HL_9RU7_051 | 1/L5/4497:4503 | No text annotation | homologous HL_9PN5_061 HL_02262.2 | |
| HL_9RU7_052 | 1/L5/4540:4545 | No text annotation | homologous HL_8GLP_069 HL_34789.7 | |
| HL_9RU7_053 | 1/L5/4603:4608 | No text annotation | homologous HL_8GLP_070 HL_34789.7 | |
| HL_9RU7_054 | 1/L5/4646:4651 | No text annotation | homologous HL_8GLP_071 HL_12125.5 | |
| HL_9RU7_055 | 1/L5/4688:4702 | No text annotation | homologous HL_9PN5_065 HL_53269.5 | |
| HL_9RU7_056 | 1/L5/4906:4915 | No text annotation | ||
| HL_9RU7_057 | 1/L5/4975:4983 | No text annotation | homologous HL_8GLP_075 HL_37889.4 | |
| HL_9RU7_058 | 1/L7/32:45 | No text annotation | geometric HL_8QYX_071 HL_01182.3 | |
| HL_9RU7_059 | 1/L7/36:41 | No text annotation | homologous HL_7A0S_069 HL_59381.5 | |
| HL_9RU7_060 | 1/L7/86:91 | GNRA | homologous HL_4V9F_072 HL_34789.7 | |
| HL_9RU7_061 | 1/L8/47:56 | No text annotation | homologous HL_9AXU_071 HL_17803.4 | |
| HL_9RU7_062 | 1/L8/107:112 | No text annotation | homologous HL_8GLP_080 HL_23875.2 | |
| HL_9RU7_063 | 1/Pt/13:23 | No text annotation | homologous HL_4LCK_001 NA | |
| HL_9RU7_064 | 1/Pt/32:40 | tRNA anticodon loop | homologous HL_6CFJ_107 HL_81376.5 | |
| HL_9RU7_065 | 1/Pt/54:62 | T-loop with 2 stacked bulged bases | homologous HL_5HR6_003 HL_33597.8 | |
| HL_9RU7_066 | 1/S2/7:17 | No text annotation | homologous HL_9PN5_077 HL_73535.4 | |
| HL_9RU7_067 | 1/S2/156:162 | No text annotation | homologous HL_9PN5_079 HL_34789.7 | |
| HL_9RU7_068 | 1/S2/288:295 | No text annotation | homologous HL_9PN5_082 HL_67772.4 | |
| HL_9RU7_069 | 1/S2/377:387 | No text annotation | geometric HL_8GLP_091 HL_50525.1 | |
| HL_9RU7_070 | 1/S2/416:421 | No text annotation | homologous HL_9PN5_085 HL_34789.7 | |
| HL_9RU7_071 | 1/S2/441:452 | No text annotation | homologous HL_9PN5_086 HL_86432.4 | |
| HL_9RU7_072 | 1/S2/462:467 | No text annotation | homologous HL_9H3G_087 HL_61337.7 | |
| HL_9RU7_073 | 1/S2/498:504 | No text annotation | homologous HL_9PN5_088 HL_25795.2 | |
| HL_9RU7_074 | 1/S2/569:581 | No text annotation | homologous HL_9PN5_090 HL_68749.4 | |
| HL_9RU7_075 | 1/S2/618:623 | No text annotation | homologous HL_9PN5_091 HL_34789.7 | |
| HL_9RU7_076 | 1/S2/820:828 | No text annotation | homologous HL_9PN5_092 HL_11974.5 | |
| HL_9RU7_077 | 1/S2/957:966 | No text annotation | homologous HL_9PN5_095 HL_38491.5 | |
| HL_9RU7_078 | 1/S2/994:999 | No text annotation | homologous HL_9PN5_096 HL_34789.7 | |
| HL_9RU7_079 | 1/S2/1054:1064 | No text annotation | homologous HL_9H3G_095 HL_38491.5 | |
| HL_9RU7_080 | 1/S2/1113:1120 | No text annotation | ||
| HL_9RU7_081 | 1/S2/1141:1146 | No text annotation | homologous HL_9H3G_097 HL_34789.7 | |
| HL_9RU7_082 | 1/S2/1178:1183 | No text annotation | homologous HL_9PN5_100 HL_34789.7 | |
| HL_9RU7_083 | 1/S2/1245:1254 | No text annotation | homologous HL_9H3G_099 HL_97521.4 | |
| HL_9RU7_084 | 1/S2/1295:1304 | No text annotation | homologous HL_9H3G_100 HL_98423.6 | |
| HL_9RU7_085 | 1/S2/1353:1358 | No text annotation | homologous HL_9H3G_101 HL_34789.7 | |
| HL_9RU7_086 | 1/S2/1366:1373 | No text annotation | homologous HL_9H3G_102 HL_63894.5 | |
| HL_9RU7_087 | 1/S2/1458:1467 | No text annotation | ||
| HL_9RU7_088 | 1/S2/1565:1570 | No text annotation | homologous HL_9PN5_107 HL_34789.7 | |
| HL_9RU7_089 | 1/S2/1614:1625 | No text annotation | homologous HL_9PN5_108 HL_50951.4 | |
| HL_9RU7_090 | 1/S2/1658:1666 | No text annotation | homologous HL_9H3G_107 HL_25307.3 | |
| HL_9RU7_091 | 1/S2/1847:1852 | No text annotation | homologous HL_9PN5_111 HL_34789.7 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9RU7_092 | tRNA D-loop | ||
| HL_9RU7_093 | tRNA anticodon loop | ||
| HL_9RU7_094 | T-loop with 2 stacked bulged bases |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9RU7_001 | 1/L5/6:7, 1/L8/149:151 | Single bulged C | homologous IL_8GLP_001 IL_05642.6 | |
| IL_9RU7_002 | 1/L5/12:14, 1/L8/143:144 | Single bulged U | homologous IL_8GLP_002 IL_97561.8 | |
| IL_9RU7_003 | 1/L5/16:18, 1/L8/139:141 | Isolated non-canonical cWW pair | homologous IL_8GLP_003 IL_19025.1 | |
| IL_9RU7_004 | 1/L5/26:27, 1/L5/55:57 | Single stack bend | homologous IL_8GLP_004 IL_15011.6 | |
| IL_9RU7_005 | 1/L5/30:37, 1/L5/44:52 | 9x8 Sarcin-Ricin; G-bulge | homologous IL_8GLP_005 IL_93502.4 | |
| IL_9RU7_006 | 1/L5/81:88, 1/L5/96:102 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8GLP_006 IL_62167.6 | |
| IL_9RU7_007 | 1/L5/118:121, 1/L5/152:153 | No text annotation | geometric IL_8GLP_007 IL_36175.2 | |
| IL_9RU7_008 | 1/L5/118:122, 1/L5/147:153 | Kink-turn with embedded cWW pair | geometric IL_8GLP_287 IL_65996.1 | |
| IL_9RU7_009 | 1/L5/121:122, 1/L5/147:152 | No text annotation | homologous IL_8GLP_008 IL_10396.4 | |
| IL_9RU7_010 | 1/L5/195:196, 1/L5/244:246 | Single bulged C | homologous IL_8GLP_015 IL_05642.6 | |
| IL_9RU7_011 | 1/L5/199:201, 1/L5/214:215 | Single bulged U | homologous IL_8GLP_016 IL_97561.8 | |
| IL_9RU7_012 | 1/L5/339:342, 1/L8/32:33 | Minor groove platform | homologous IL_8GLP_017 IL_26092.1 | |
| IL_9RU7_013 | 1/L5/348:350, 1/L8/25:26 | Single bulged A | homologous IL_8GLP_018 IL_14190.5 | |
| IL_9RU7_014 | 1/L5/387:390, 1/L5/401:414 | No text annotation | geometric IL_8GLP_019 IL_44923.4 | |
| IL_9RU7_015 | 1/L5/415:421, 1/L8/13:19 | No text annotation | homologous IL_8GLP_021 IL_22311.4 | |
| IL_9RU7_016 | 1/L5/462:464, 1/L5/691:693 | Isolated non-canonical cWW pair | homologous IL_8GLP_025 IL_01003.7 | |
| IL_9RU7_018 | 1/L5/508:510, 1/L5/649:650 | Single bulged A | homologous IL_8GLP_032 IL_14190.5 | |
| IL_9RU7_019 | 1/L5/709:710, 1/L5/1286:1288 | Single bulged G | homologous IL_8GLP_034 IL_28408.5 | |
| IL_9RU7_020 | 1/L5/723:724, 1/L5/942:945 | No text annotation | homologous IL_8GLP_035 IL_09092.2 | |
| IL_9RU7_021 | 1/L5/727:731, 1/L5/938:939 | No text annotation | homologous IL_8GLP_036 IL_75501.2 | |
| IL_9RU7_022 | 1/L5/732:735, 1/L5/928:937 | No text annotation | homologous IL_8GLP_037 NA | |
| IL_9RU7_023 | 1/L5/739:742, 1/L5/922:924 | No text annotation | geometric IL_4N0T_004 IL_32983.4 | |
| IL_9RU7_024 | 1/L5/745:752, 1/L5/911:919 | No text annotation | homologous IL_8GLP_040 IL_25001.3 | |
| IL_9RU7_025 | 1/L5/1073:1074, 1/L5/1237:1239 | Single bulged A | homologous IL_8GLP_041 IL_14190.5 | |
| IL_9RU7_026 | 1/L5/1086:1087, 1/L5/1209:1211 | Single bulged C | homologous IL_8GLP_044 IL_05642.6 | |
| IL_9RU7_027 | 1/L5/1173:1175, 1/L5/1186:1188 | Isolated cWH basepair | homologous IL_8GLP_047 IL_10892.5 | |
| IL_9RU7_028 | 1/L5/1244:1245, 1/L5/1265:1267 | Single bulged G | homologous IL_8GLP_048 IL_28408.5 | |
| IL_9RU7_029 | 1/L5/1357:1360, 1/L5/1379:1382 | No text annotation | ||
| IL_9RU7_030 | 1/L5/1357:1361, 1/L5/1376:1382 | No text annotation | homologous IL_8GLP_288 NA | |
| IL_9RU7_031 | 1/L5/1360:1361, 1/L5/1376:1379 | No text annotation | homologous IL_8GLP_050 IL_73464.3 | |
| IL_9RU7_032 | 1/L5/1425:1429, 1/L5/1455:1460 | No text annotation | homologous IL_8GLP_051 IL_47352.3 | |
| IL_9RU7_033 | 1/L5/1431:1434, 1/L5/1450:1453 | Double sheared | homologous IL_8GLP_052 IL_58355.5 | |
| IL_9RU7_034 | 1/L5/1467:1468, 1/L5/1496:1498 | Single bulged A | homologous IL_9PN5_023 IL_14190.5 | |
| IL_9RU7_035 | 1/L5/1474:1476, 1/L5/1489:1490 | Single stack bend | homologous IL_8GLP_054 IL_15011.6 | |
| IL_9RU7_036 | 1/L5/1479:1480, 1/L5/1484:1486 | Single bulged C | homologous IL_8GLP_055 IL_05642.6 | |
| IL_9RU7_037 | 1/L5/1520:1522, 1/L5/1655:1657 | Isolated non-canonical cWW pair | homologous IL_9PN5_026 IL_01003.7 | |
| IL_9RU7_038 | 1/L5/1522:1526, 1/L5/1648:1655 | No text annotation | homologous IL_9PN5_027 IL_73855.4 | |
| IL_9RU7_039 | 1/L5/1545:1546, 1/L5/1612:1614 | Single bulged A | homologous IL_8GLP_057 IL_14190.5 | |
| IL_9RU7_040 | 1/L5/1550:1551, 1/L5/1576:1578 | Single bulged G | homologous IL_8GLP_058 IL_28408.5 | |
| IL_9RU7_041 | 1/L5/1551:1555, 1/L5/1572:1576 | No text annotation | homologous IL_8GLP_059 IL_15190.5 | |
| IL_9RU7_042 | 1/L5/1586:1589, 1/L5/1605:1607 | No text annotation | homologous IL_9PN5_031 IL_36931.5 | |
| IL_9RU7_043 | 1/L5/1590:1592, 1/L5/1603:1604 | Single bulged U | homologous IL_8GLP_061 IL_97561.8 | |
| IL_9RU7_044 | 1/L5/1624:1626, 1/L5/1636:1640 | No text annotation | homologous IL_8GLP_062 IL_89509.4 | |
| IL_9RU7_045 | 1/L5/1671:1673, 1/L5/1682:1684 | Isolated non-canonical cWW pair | homologous IL_9AXU_033 IL_71625.6 | |
| IL_9RU7_046 | 1/L5/1686:1688, 1/L5/1848:1851 | No text annotation | homologous IL_8GLP_064 IL_16315.2 | |
| IL_9RU7_047 | 1/L5/1723:1725, 1/L5/1838:1839 | Single bulged G | homologous IL_8GLP_066 IL_28408.5 | |
| IL_9RU7_048 | 1/L5/1732:1737, 1/L5/1792:1797 | No text annotation | homologous IL_8GLP_291 IL_46203.1 | |
| IL_9RU7_049 | 1/L5/1737:1738, 1/L5/1790:1792 | Minor groove platform | homologous IL_9PN5_038 IL_37129.1 | |
| IL_9RU7_050 | 1/L5/1739:1744, 1/L5/1786:1789 | No text annotation | homologous IL_9H3G_046 IL_16301.4 | |
| IL_9RU7_051 | 1/L5/1746:1749, 1/L5/1781:1784 | Tandem non-canonical cWW pairs; U in syn | homologous IL_9PN5_040 IL_71194.5 | |
| IL_9RU7_052 | 1/L5/1749:1751, 1/L5/1779:1781 | Isolated non-canonical cWW pair | homologous IL_9PN5_041 IL_01003.7 | |
| IL_9RU7_053 | 1/L5/1753:1756, 1/L5/1776:1777 | No text annotation | homologous IL_8GLP_070 IL_73108.5 | |
| IL_9RU7_054 | 1/L5/1814:1816, 1/L5/1823:1824 | Single bulged G | homologous IL_8GLP_072 IL_28408.5 | |
| IL_9RU7_055 | 1/L5/1858:1860, 1/L5/1874:1876 | Isolated non-canonical cWW pair | homologous IL_9H3G_052 IL_01003.7 | |
| IL_9RU7_057 | 1/L5/1905:1909, 1/L5/2067:2071 | UAA/GAN | homologous IL_8GLP_075 IL_08938.4 | |
| IL_9RU7_058 | 1/L5/1911:1918, 1/L5/2064:2065 | No text annotation | homologous IL_8GLP_076 IL_11411.4 | |
| IL_9RU7_059 | 1/L5/1918:1920, 1/L5/2063:2064 | Single bulged G | homologous IL_8GLP_077 IL_28408.5 | |
| IL_9RU7_060 | 1/L5/1920:1922, 1/L5/2062:2063 | Single bulged C | homologous IL_8GLP_078 IL_05642.6 | |
| IL_9RU7_061 | 1/L5/1926:1933, 1/L5/2053:2058 | No text annotation | homologous IL_8GLP_079 IL_39054.4 | |
| IL_9RU7_062 | 1/L5/1946:1948, 1/L5/2035:2036 | Single bulged U | homologous IL_8GLP_081 IL_97561.8 | |
| IL_9RU7_063 | 1/L5/2083:2085, 1/L5/2272:2273 | Single bulged C | geometric IL_8GLP_044 IL_05642.6 | |
| IL_9RU7_064 | 1/L5/2290:2292, 1/L5/2342:2345 | No text annotation | homologous IL_8GLP_084 IL_84227.2 | |
| IL_9RU7_065 | 1/L5/2299:2301, 1/L5/2334:2335 | Single bulged A | homologous IL_8GLP_085 IL_14190.5 | |
| IL_9RU7_066 | 1/L5/2302:2309, 1/L5/2329:2333 | Kink-turn | homologous IL_8GLP_086 IL_90775.4 | |
| IL_9RU7_067 | 1/L5/2312:2314, 1/L5/2325:2326 | Single bulged A | homologous IL_8GLP_087 IL_14190.5 | |
| IL_9RU7_068 | 1/L5/2358:2364, 1/L5/3858:3863 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_8GLP_300 IL_02666.4 | |
| IL_9RU7_069 | 1/L5/2406:2409, 1/L5/2783:2784 | Major groove platform; stack outside cWW | geometric IL_8GLP_089 IL_74641.5 | |
| IL_9RU7_070 | 1/L5/2415:2419, 1/L5/2427:2429 | No text annotation | homologous IL_8GLP_301 IL_06671.4 | |
| IL_9RU7_071 | 1/L5/2446:2450, 1/L5/2509:2514 | UAA/GAN | homologous IL_8GLP_091 IL_08938.4 | |
| IL_9RU7_073 | 1/L5/2549:2550, 1/L5/2768:2770 | Single bulged U | homologous IL_8GLP_095 IL_97561.8 | |
| IL_9RU7_074 | 1/L5/2589:2593, 1/L5/2752:2756 | No text annotation | homologous IL_8GLP_096 IL_15190.5 | |
| IL_9RU7_075 | 1/L5/2613:2614, 1/L5/2724:2726 | Single bulged A | homologous IL_8GLP_097 IL_14190.5 | |
| IL_9RU7_076 | 1/L5/2614:2615, 1/L5/2722:2724 | Single stack bend | homologous IL_8GLP_098 IL_15011.6 | |
| IL_9RU7_077 | 1/L5/2646:2648, 1/L5/2685:2688 | No text annotation | homologous IL_8GLP_099 IL_87316.5 | |
| IL_9RU7_078 | 1/L5/2651:2653, 1/L5/2681:2682 | Single bulged G | homologous IL_8GLP_100 IL_28408.5 | |
| IL_9RU7_079 | 1/L5/2656:2662, 1/L5/2672:2678 | No text annotation | homologous IL_8GLP_101 IL_93476.4 | |
| IL_9RU7_080 | 1/L5/2704:2705, 1/L5/2710:2712 | Single bulged G | homologous IL_8GLP_102 IL_28408.5 | |
| IL_9RU7_081 | 1/L5/2832:2838, 1/L5/3850:3853 | No text annotation | homologous IL_9PN5_072 IL_89862.4 | |
| IL_9RU7_082 | 1/L5/2844:2846, 1/L5/3842:3844 | No text annotation | homologous IL_9PN5_073 IL_10432.4 | |
| IL_9RU7_083 | 1/L5/2847:2850, 1/L5/3840:3841 | Major groove platform; stack outside cWW | geometric IL_8GLP_304 IL_74641.5 | |
| IL_9RU7_084 | 1/L5/2847:2855, 1/L5/3837:3841 | No text annotation | geometric IL_8GLP_305 IL_80252.4 | |
| IL_9RU7_085 | 1/L5/2850:2855, 1/L5/3837:3840 | No text annotation | homologous IL_8GLP_107 IL_28217.4 | |
| IL_9RU7_086 | 1/L5/2867:2872, 1/L5/2877:2883 | No text annotation | homologous IL_8GLP_108 IL_20700.4 | |
| IL_9RU7_087 | 1/L5/2889:2891, 1/L5/3610:3612 | Isolated non-canonical cWW pair | homologous IL_8GLP_109 IL_01003.7 | |
| IL_9RU7_088 | 1/L5/2896:2897, 1/L5/3602:3605 | No text annotation | homologous IL_8GLP_110 IL_18824.4 | |
| IL_9RU7_089 | 1/L5/3632:3633, 1/L5/3827:3829 | Single bulged A | homologous IL_8GLP_113 IL_14190.5 | |
| IL_9RU7_090 | 1/L5/3660:3665, 1/L5/3677:3684 | No text annotation | homologous IL_8GLP_114 IL_14684.4 | |
| IL_9RU7_091 | 1/L5/3700:3703, 1/L5/3749:3750 | No text annotation | homologous IL_9PN5_082 IL_55206.4 | |
| IL_9RU7_092 | 1/L5/3704:3705, 1/L5/3745:3748 | No text annotation | homologous IL_9PN5_083 IL_71421.6 | |
| IL_9RU7_093 | 1/L5/3708:3710, 1/L5/3741:3742 | Single stack bend | homologous IL_8GLP_119 IL_15011.6 | |
| IL_9RU7_094 | 1/L5/3710:3714, 1/L5/3739:3741 | No text annotation | homologous IL_8GLP_120 IL_67721.1 | |
| IL_9RU7_095 | 1/L5/3715:3721, 1/L5/3732:3738 | No text annotation | homologous IL_9H3G_097 IL_65359.4 | |
| IL_9RU7_096 | 1/L5/3780:3781, 1/L5/3811:3814 | No text annotation | geometric IL_9PN5_086 IL_24886.5 | |
| IL_9RU7_097 | 1/L5/3781:3792, 1/L5/3808:3811 | No text annotation | homologous IL_8GLP_307 IL_84014.4 | |
| IL_9RU7_098 | 1/L5/3895:3898, 1/L5/4563:4565 | No text annotation | homologous IL_9PN5_088 IL_75527.5 | |
| IL_9RU7_099 | 1/L5/3900:3902, 1/L5/4558:4561 | No text annotation | homologous IL_8GLP_129 IL_80025.4 | |
| IL_9RU7_100 | 1/L5/3913:3915, 1/L5/4388:4389 | Single bulged U | homologous IL_8GLP_130 IL_97561.8 | |
| IL_9RU7_101 | 1/L5/3916:3917, 1/L5/4384:4387 | Minor groove platform | homologous IL_9H3G_103 IL_37129.1 | |
| IL_9RU7_102 | 1/L5/3927:3929, 1/L5/4181:4184 | No text annotation | homologous IL_8GLP_133 IL_87316.5 | |
| IL_9RU7_103 | 1/L5/4082:4088, 1/L5/4161:4164 | No text annotation | homologous IL_8GLP_135 IL_52092.4 | |
| IL_9RU7_104 | 1/L5/4094:4097, 1/L5/4112:4114 | No text annotation | ||
| IL_9RU7_105 | 1/L5/4191:4192, 1/L5/4202:4204 | AG tHS outside loop | homologous IL_8GLP_137 IL_14190.5 | |
| IL_9RU7_106 | 1/L5/4243:4245, 1/L5/4263:4267 | No text annotation | homologous IL_9PN5_095 IL_14250.4 | |
| IL_9RU7_107 | 1/L5/4291:4293, 1/L5/4317:4318 | Single bulged A | homologous IL_9AXU_093 IL_14190.5 | |
| IL_9RU7_108 | 1/L5/4295:4298, 1/L5/4312:4315 | Tandem non-canonical cWW pairs | homologous IL_9AXU_094 IL_15225.5 | |
| IL_9RU7_109 | 1/L5/4347:4350, 1/L5/4364:4365 | No text annotation | homologous IL_8GLP_141 IL_57267.1 | |
| IL_9RU7_110 | 1/L5/4400:4405, 1/L5/4439:4444 | No text annotation | homologous IL_8GLP_142 NA | |
| IL_9RU7_111 | 1/L5/4405:4407, 1/L5/4435:4439 | No text annotation | homologous IL_9PN5_100 IL_36931.5 | |
| IL_9RU7_112 | 1/L5/4412:4416, 1/L5/4426:4430 | No text annotation | homologous IL_8GLP_145 IL_87767.5 | |
| IL_9RU7_113 | 1/L5/4453:4454, 1/L5/4526:4528 | No text annotation | homologous IL_8GLP_146 IL_46637.5 | |
| IL_9RU7_114 | 1/L5/4456:4458, 1/L5/4520:4524 | No text annotation | homologous IL_9PN5_103 IL_30722.2 | |
| IL_9RU7_115 | 1/L5/4458:4459, 1/L5/4517:4520 | No text annotation | homologous IL_9PN5_104 IL_44609.5 | |
| IL_9RU7_116 | 1/L5/4466:4468, 1/L5/4489:4491 | Isolated non-canonical cWW pair | geometric IL_8GLP_149 IL_01003.7 | |
| IL_9RU7_117 | 1/L5/4466:4470, 1/L5/4485:4491 | No text annotation | geometric IL_8GLP_315 IL_56912.1 | |
| IL_9RU7_118 | 1/L5/4468:4470, 1/L5/4485:4489 | No text annotation | homologous IL_8GLP_150 IL_09353.2 | |
| IL_9RU7_119 | 1/L5/4495:4497, 1/L5/4503:4505 | Isolated non-canonical cWW pair | homologous IL_8GLP_152 IL_01003.7 | |
| IL_9RU7_120 | 1/L5/4537:4538, 1/L5/4547:4549 | Single bulged A | homologous IL_9PN5_109 IL_14190.5 | |
| IL_9RU7_121 | 1/L5/4580:4582, 1/L5/4721:4723 | Isolated cWH basepair | homologous IL_8GLP_157 IL_10892.5 | |
| IL_9RU7_122 | 1/L5/4582:4585, 1/L5/4717:4721 | No text annotation | homologous IL_8GLP_158 IL_46211.1 | |
| IL_9RU7_123 | 1/L5/4590:4592, 1/L5/4618:4620 | Isolated non-canonical cWW pair | homologous IL_8GLP_316 IL_71625.6 | |
| IL_9RU7_124 | 1/L5/4596:4603, 1/L5/4608:4614 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_8GLP_159 IL_34443.2 | |
| IL_9RU7_125 | 1/L5/4624:4629, 1/L5/4669:4673 | No text annotation | homologous IL_8GLP_317 IL_31690.2 | |
| IL_9RU7_126 | 1/L5/4632:4637, 1/L5/4662:4666 | No text annotation | homologous IL_8GLP_318 IL_43276.1 | |
| IL_9RU7_127 | 1/L5/4638:4640, 1/L5/4659:4661 | Isolated cWH basepair | homologous IL_8GLP_162 IL_10892.5 | |
| IL_9RU7_128 | 1/L5/4641:4642, 1/L5/4655:4658 | No text annotation | homologous IL_8GLP_163 IL_44609.5 | |
| IL_9RU7_129 | 1/L5/4680:4685, 1/L5/4705:4710 | No text annotation | homologous IL_8GLP_164 IL_91079.1 | |
| IL_9RU7_130 | 1/L5/4739:4742, 1/L5/4958:4960 | Isolated non-canonical cWW pair | homologous IL_9H3G_134 IL_19025.1 | |
| IL_9RU7_131 | 1/L5/4743:4746, 1/L5/4954:4957 | Tandem non-canonical cWW pairs | homologous IL_8GLP_166 IL_15225.5 | |
| IL_9RU7_132 | 1/L5/4749:4751, 1/L5/4948:4951 | No text annotation | homologous IL_8GLP_167 IL_31990.1 | |
| IL_9RU7_133 | 1/L5/4756:4765, 1/L5/4869:4877 | No text annotation | homologous IL_8GLP_168 NA | |
| IL_9RU7_134 | 1/L5/4769:4771, 1/L5/4863:4865 | Isolated non-canonical cWW pair | homologous IL_8GLP_169 IL_71625.6 | |
| IL_9RU7_136 | 1/L5/4885:4889, 1/L5/4930:4934 | No text annotation | homologous IL_8GLP_170 NA | |
| IL_9RU7_137 | 1/L5/4891:4896, 1/L5/4924:4928 | No text annotation | homologous IL_8GLP_171 NA | |
| IL_9RU7_138 | 1/L5/4972:4975, 1/L5/4983:4986 | Tandem non-canonical cWW pairs | homologous IL_9H3G_140 IL_71194.5 | |
| IL_9RU7_139 | 1/L5/4992:4994, 1/L5/5057:5059 | Isolated non-canonical cWW pair | homologous IL_8GLP_173 IL_01003.7 | |
| IL_9RU7_140 | 1/L5/5000:5002, 1/L5/5045:5050 | No text annotation | homologous IL_9H3G_143 IL_00086.4 | |
| IL_9RU7_141 | 1/L5/5003:5009, 1/L5/5039:5044 | No text annotation | homologous IL_8GLP_176 NA | |
| IL_9RU7_142 | 1/L5/5012:5014, 1/L5/5035:5036 | Single bulged C | homologous IL_8GLP_178 IL_05642.6 | |
| IL_9RU7_143 | 1/L5/5014:5017, 1/L5/5032:5035 | Double sheared | homologous IL_8GLP_179 IL_58355.5 | |
| IL_9RU7_144 | 1/L7/15:16, 1/L7/62:64 | Single bulged C | geometric IL_8QYX_165 IL_05642.6 | |
| IL_9RU7_145 | 1/L7/21:27, 1/L7/52:57 | No text annotation | geometric IL_8QYX_166 IL_41504.3 | |
| IL_9RU7_146 | 1/L7/28:29, 1/L7/48:51 | Major groove minor groove platform; mini C-loop | homologous IL_4V9F_103 IL_73108.5 | |
| IL_9RU7_147 | 1/L7/32:36, 1/L7/41:45 | Symmetric double minor groove platform | homologous IL_4V9F_104 IL_58103.15 | |
| IL_9RU7_148 | 1/L7/71:78, 1/L7/98:104 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_8QYX_169 IL_62879.2 | |
| IL_9RU7_149 | 1/L7/79:81, 1/L7/95:97 | Isolated non-canonical cWW pair | homologous IL_7A0S_107 IL_81485.1 | |
| IL_9RU7_150 | 1/L7/82:85, 1/L7/92:94 | Isolated non-canonical cWW pair | geometric IL_8QYX_171 IL_01003.7 | |
| IL_9RU7_151 | 1/L8/64:66, 1/L8/92:95 | No text annotation | homologous IL_8GLP_187 IL_30722.2 | |
| IL_9RU7_152 | 1/L8/66:68, 1/L8/90:92 | Isolated cWH basepair | geometric IL_3D0M_001 IL_10892.5 | |
| IL_9RU7_153 | 1/S2/23:25, 1/S2/649:651 | Isolated non-canonical cWW pair | geometric IL_3MEI_002 IL_01003.7 | |
| IL_9RU7_154 | 1/S2/26:28, 1/S2/646:648 | Isolated cWH basepair | geometric IL_8CRE_411 IL_10892.5 | |
| IL_9RU7_155 | 1/S2/34:36, 1/S2/519:521 | Isolated non-canonical cWW pair | homologous IL_9PN5_143 IL_01003.7 | |
| IL_9RU7_156 | 1/S2/37:40, 1/S2/514:518 | Double sheared | geometric IL_8GLP_190 IL_58355.5 | |
| IL_9RU7_157 | 1/S2/41:47, 1/S2/479:481 | No text annotation | geometric IL_8GLP_191 IL_88082.5 | |
| IL_9RU7_158 | 1/S2/49:51, 1/S2/476:477 | Minor groove platform | homologous IL_9PN5_146 IL_26092.1 | |
| IL_9RU7_159 | 1/S2/57:62, 1/S2/86:88 | No text annotation | homologous IL_9PN5_147 IL_61299.9 | |
| IL_9RU7_160 | 1/S2/108:110, 1/S2/351:353 | Isolated non-canonical cWW pair | geometric IL_8FEQ_001 IL_71625.6 | |
| IL_9RU7_161 | 1/S2/110:112, 1/S2/349:351 | Isolated non-canonical cWW pair | geometric IL_8GLP_197 IL_01003.7 | |
| IL_9RU7_162 | 1/S2/112:115, 1/S2/348:349 | No text annotation | homologous IL_9H3G_163 IL_71421.6 | |
| IL_9RU7_163 | 1/S2/116:121, 1/S2/343:347 | No text annotation | homologous IL_9H3G_164 IL_31545.4 | |
| IL_9RU7_164 | 1/S2/145:151, 1/S2/167:174 | No text annotation | homologous IL_9H3G_165 IL_24485.3 | |
| IL_9RU7_165 | 1/S2/152:155, 1/S2/163:166 | No text annotation | homologous IL_9H3G_166 IL_37443.2 | |
| IL_9RU7_166 | 1/S2/312:314, 1/S2/336:337 | Single bulged A | homologous IL_9H3G_171 IL_14190.5 | |
| IL_9RU7_167 | 1/S2/359:364, 1/S2/396:403 | Kink-turn with non-sequential stacking | homologous IL_9PN5_159 IL_46174.7 | |
| IL_9RU7_168 | 1/S2/366:371, 1/S2/393:394 | No text annotation | homologous IL_9PN5_160 IL_01372.4 | |
| IL_9RU7_169 | 1/S2/411:413, 1/S2/424:429 | No text annotation | homologous IL_9H3G_175 IL_93336.4 | |
| IL_9RU7_170 | 1/S2/437:439, 1/S2/454:456 | Isolated cWH basepair | homologous IL_9PN5_162 IL_10892.5 | |
| IL_9RU7_171 | 1/S2/459:461, 1/S2/468:470 | Isolated non-canonical cWW pair | homologous IL_9PN5_163 IL_19025.1 | |
| IL_9RU7_172 | 1/S2/487:489, 1/S2/511:512 | Single bulged U | homologous IL_9PN5_164 IL_97561.8 | |
| IL_9RU7_173 | 1/S2/491:495, 1/S2/508:509 | No text annotation | homologous IL_9PN5_165 IL_26900.4 | |
| IL_9RU7_174 | 1/S2/495:496, 1/S2/506:508 | Single bulged G | homologous IL_9PN5_166 IL_28408.5 | |
| IL_9RU7_175 | 1/S2/563:565, 1/S2/585:592 | No text annotation | homologous IL_9H3G_182 IL_02511.3 | |
| IL_9RU7_176 | 1/S2/566:569, 1/S2/581:584 | Tandem non-canonical cWW pairs | geometric IL_8GLP_220 IL_71194.5 | |
| IL_9RU7_177 | 1/S2/599:606, 1/S2/636:637 | No text annotation | homologous IL_9PN5_171 IL_11411.4 | |
| IL_9RU7_178 | 1/S2/606:608, 1/S2/635:636 | Single bulged U | homologous IL_9PN5_172 IL_97561.8 | |
| IL_9RU7_179 | 1/S2/611:617, 1/S2/624:632 | Kink-turn related | homologous IL_9PN5_173 IL_52042.4 | |
| IL_9RU7_180 | 1/S2/663:665, 1/S2/1162:1164 | Isolated non-canonical cWW pair | homologous IL_9H3G_188 IL_19025.1 | |
| IL_9RU7_181 | 1/S2/665:671, 1/S2/1161:1162 | No text annotation | homologous IL_9PN5_174 IL_20847.4 | |
| IL_9RU7_182 | 1/S2/673:675, 1/S2/1030:1032 | Isolated non-canonical cWW pair | homologous IL_9PN5_175 IL_01003.7 | |
| IL_9RU7_183 | 1/S2/676:680, 1/S2/1025:1029 | No text annotation | homologous IL_9PN5_176 IL_05821.4 | |
| IL_9RU7_184 | 1/S2/802:803, 1/S2/860:863 | No text annotation | homologous IL_9PN5_178 IL_73108.5 | |
| IL_9RU7_185 | 1/S2/804:807, 1/S2/856:859 | No text annotation | geometric IL_9PN5_200 IL_39691.1 | |
| IL_9RU7_186 | 1/S2/807:815, 1/S2/849:856 | No text annotation | homologous IL_9H3G_194 IL_59049.5 | |
| IL_9RU7_187 | 1/S2/874:876, 1/S2/910:912 | Isolated non-canonical cWW pair | geometric IL_1YZ9_002 IL_01003.7 | |
| IL_9RU7_188 | 1/S2/877:879, 1/S2/907:909 | No text annotation | homologous IL_9H3G_195 NA | |
| IL_9RU7_189 | 1/S2/922:923, 1/S2/1019:1022 | Major groove platform; stack outside cWW | geometric IL_8GLP_235 IL_74641.5 | |
| IL_9RU7_190 | 1/S2/925:926, 1/S2/1015:1017 | Single bulged U | geometric IL_6UFH_004 IL_97561.8 | |
| IL_9RU7_191 | 1/S2/928:931, 1/S2/1010:1013 | Tandem non-canonical cWW pairs | homologous IL_9H3G_199 IL_15225.5 | |
| IL_9RU7_192 | 1/S2/931:935, 1/S2/1007:1010 | Tandem non-canonical cWW pairs | homologous IL_9PN5_185 IL_15225.5 | |
| IL_9RU7_193 | 1/S2/942:945, 1/S2/981:984 | Tandem non-canonical cWW pairs | homologous IL_9PN5_186 IL_15225.5 | |
| IL_9RU7_194 | 1/S2/952:956, 1/S2/967:974 | Kink-turn | homologous IL_9H3G_202 IL_71972.2 | |
| IL_9RU7_195 | 1/S2/1042:1047, 1/S2/1071:1073 | No text annotation | homologous IL_9PN5_189 IL_31690.2 | |
| IL_9RU7_196 | 1/S2/1047:1051, 1/S2/1067:1071 | No text annotation | homologous IL_9H3G_204 IL_05821.4 | |
| IL_9RU7_197 | 1/S2/1091:1093, 1/S2/1152:1158 | No text annotation | homologous IL_9H3G_205 IL_82706.5 | |
| IL_9RU7_198 | 1/S2/1098:1101, 1/S2/1131:1134 | Tandem non-canonical cWW pairs | homologous IL_9PN5_192 IL_15225.5 | |
| IL_9RU7_199 | 1/S2/1101:1103, 1/S2/1129:1131 | Isolated cWH basepair | geometric IL_8GLP_245 IL_10892.5 | |
| IL_9RU7_200 | 1/S2/1108:1110, 1/S2/1123:1124 | Minor groove platform | geometric IL_8GLP_246 IL_26092.1 | |
| IL_9RU7_201 | 1/S2/1168:1175, 1/S2/1186:1191 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_9PN5_194 IL_84044.4 | |
| IL_9RU7_202 | 1/S2/1203:1204, 1/S2/1694:1696 | Single bulged A | homologous IL_9PN5_195 IL_14190.5 | |
| IL_9RU7_203 | 1/S2/1206:1208, 1/S2/1691:1692 | Single bulged G | homologous IL_9PN5_196 IL_28408.5 | |
| IL_9RU7_204 | 1/S2/1214:1217, 1/S2/1681:1685 | No text annotation | homologous IL_9PN5_197 IL_63596.15 | |
| IL_9RU7_205 | 1/S2/1230:1232, 1/S2/1526:1528 | Isolated non-canonical cWW pair | homologous IL_9H3G_213 IL_01003.7 | |
| IL_9RU7_206 | 1/S2/1235:1236, 1/S2/1521:1523 | Minor groove platform | homologous IL_9H3G_214 IL_37129.1 | |
| IL_9RU7_207 | 1/S2/1270:1272, 1/S2/1510:1512 | Isolated non-canonical cWW pair | homologous IL_9H3G_215 IL_01003.7 | |
| IL_9RU7_208 | 1/S2/1290:1294, 1/S2/1305:1309 | No text annotation | ||
| IL_9RU7_209 | 1/S2/1325:1327, 1/S2/1502:1503 | Single bulged U | homologous IL_9PN5_203 IL_97561.8 | |
| IL_9RU7_210 | 1/S2/1329:1333, 1/S2/1498:1500 | No text annotation | geometric IL_8GLP_259 IL_82453.4 | |
| IL_9RU7_211 | 1/S2/1329:1335, 1/S2/1492:1500 | No text annotation | homologous IL_9H3G_220 NA | |
| IL_9RU7_212 | 1/S2/1333:1335, 1/S2/1492:1498 | No text annotation | homologous IL_9H3G_221 IL_09439.2 | |
| IL_9RU7_213 | 1/S2/1337:1338, 1/S2/1488:1490 | Single bulged A | homologous IL_9PN5_209 IL_14190.5 | |
| IL_9RU7_214 | 1/S2/1347:1349, 1/S2/1380:1382 | Isolated cWH basepair | homologous IL_9H3G_223 IL_10892.5 | |
| IL_9RU7_215 | 1/S2/1363:1365, 1/S2/1374:1375 | Minor groove platform | homologous IL_9H3G_224 IL_37129.1 | |
| IL_9RU7_216 | 1/S2/1395:1399, 1/S2/1447:1450 | No text annotation | geometric IL_8GLP_337 IL_37443.2 | |
| IL_9RU7_217 | 1/S2/1537:1539, 1/S2/1594:1596 | Isolated non-canonical cWW pair | geometric IL_8GLP_039 IL_01003.7 | |
| IL_9RU7_218 | 1/S2/1541:1550, 1/S2/1582:1592 | No text annotation | ||
| IL_9RU7_219 | 1/S2/1550:1558, 1/S2/1577:1582 | No text annotation | ||
| IL_9RU7_220 | 1/S2/1560:1562, 1/S2/1573:1575 | No text annotation | homologous IL_9H3G_231 IL_81485.1 | |
| IL_9RU7_221 | 1/S2/1604:1610, 1/S2/1629:1635 | No text annotation | ||
| IL_9RU7_222 | 1/S2/1700:1702, 1/S2/1833:1836 | No text annotation | homologous IL_9PN5_220 IL_18228.4 | |
| IL_9RU7_223 | 1/S2/1702:1705, 1/S2/1829:1833 | No text annotation | homologous IL_9PN5_221 IL_25873.5 | |
| IL_9RU7_224 | 1/S2/1706:1708, 1/S2/1826:1828 | Isolated non-canonical cWW pair | homologous IL_9PN5_222 IL_01003.7 | |
| IL_9RU7_225 | 1/S2/1708:1711, 1/S2/1822:1826 | No text annotation | homologous IL_9PN5_223 IL_37443.2 | |
| IL_9RU7_226 | 1/S2/1714:1716, 1/S2/1817:1819 | Isolated non-canonical cWW pair | homologous IL_9PN5_224 IL_01003.7 | |
| IL_9RU7_227 | 1/S2/1717:1720, 1/S2/1813:1816 | Double sheared | homologous IL_9PN5_225 IL_58355.5 | |
| IL_9RU7_228 | 1/S2/1720:1722, 1/S2/1812:1813 | Single bulged U | homologous IL_9PN5_226 IL_97561.8 | |
| IL_9RU7_229 | 1/S2/1729:1731, 1/S2/1803:1805 | No text annotation | homologous IL_9PN5_227 IL_55553.3 | |
| IL_9RU7_230 | 1/S2/1733:1736, 1/S2/1798:1801 | Double sheared | homologous IL_9H3G_241 IL_58355.5 | |
| IL_9RU7_231 | 1/S2/1739:1741, 1/S2/1793:1795 | Isolated non-canonical cWW pair | geometric IL_8GLP_283 IL_01003.7 | |
| IL_9RU7_232 | 1/S2/1742:1746, 1/S2/1788:1792 | No text annotation | homologous IL_9H3G_243 IL_15190.5 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9RU7_017 | No text annotation | ||
| IL_9RU7_056 | No text annotation | ||
| IL_9RU7_072 | Minor groove platform | ||
| IL_9RU7_135 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9RU7_001 | 1/L5/112:116, 1/L5/155:160, 1/L5/275:278 | No text annotation | homologous J3_8GLP_001 NA | |
| J3_9RU7_002 | 1/L5/351:367, 1/L5/374:379, 1/L8/21:24 | No text annotation | homologous J3_8GLP_024 J3_07616.4 | |
| J3_9RU7_003 | 1/L5/380:387, 1/L5/414:415, 1/L8/19:20 | No text annotation | geometric J3_8GLP_025 J3_68715.4 | |
| J3_9RU7_004 | 1/L5/380:390, 1/L5/401:415, 1/L8/19:20 | No text annotation | homologous J3_8GLP_026 J3_17917.4 | |
| J3_9RU7_005 | 1/L5/1531:1537, 1/L5/1622:1624, 1/L5/1640:1643 | No text annotation | homologous J3_9PN5_008 J3_46658.4 | |
| J3_9RU7_006 | 1/L5/1546:1548, 1/L5/1580:1584, 1/L5/1609:1612 | No text annotation | homologous J3_9H3G_013 J3_69816.4 | |
| J3_9RU7_007 | 1/L5/1726:1727, 1/L5/1802:1806, 1/L5/1832:1837 | No text annotation | homologous J3_8GLP_029 NA | |
| J3_9RU7_008 | 1/L5/2393:2399, 1/L5/2805:2807, 1/L5/2819:2822 | No text annotation | homologous J3_9AXU_013 J3_05025.4 | |
| J3_9RU7_009 | 1/L5/2402:2405, 1/L5/2785:2791, 1/L5/2800:2802 | No text annotation | homologous J3_8GLP_005 J3_76012.4 | |
| J3_9RU7_010 | 1/L5/2440:2445, 1/L5/2515:2519, 1/L5/2536:2537 | No text annotation | homologous J3_8GLP_030 J3_94309.4 | |
| J3_9RU7_011 | 1/L5/2551:2555, 1/L5/2572:2575, 1/L5/2757:2767 | No text annotation | homologous J3_8GLP_006 NA | |
| J3_9RU7_012 | 1/L5/2575:2576, 1/L5/2585:2589, 1/L5/2756:2757 | No text annotation | homologous J3_8GLP_032 J3_05348.4 | |
| J3_9RU7_013 | 1/L5/2598:2602, 1/L5/2737:2738, 1/L5/2742:2747 | No text annotation | homologous J3_8GLP_033 J3_08594.4 | |
| J3_9RU7_014 | 1/L5/3937:3939, 1/L5/4074:4078, 1/L5/4168:4173 | No text annotation | homologous J3_8GLP_007 J3_17460.1 | |
| J3_9RU7_015 | 1/L5/4091:4094, 1/L5/4114:4129, 1/L5/4155:4158 | No text annotation | homologous J3_8GLP_008 NA | |
| J3_9RU7_016 | 1/L5/4228:4230, 1/L5/4331:4342, 1/L5/4370:4375 | No text annotation | homologous J3_9PN5_020 J3_04772.4 | |
| J3_9RU7_017 | 1/L5/4241:4243, 1/L5/4267:4269, 1/L5/4278:4283 | No text annotation | homologous J3_9PN5_021 J3_05327.4 | |
| J3_9RU7_018 | 1/L5/4463:4466, 1/L5/4491:4493, 1/L5/4507:4513 | No text annotation | homologous J3_9H3G_024 J3_44047.4 | |
| J3_9RU7_019 | 1/L5/4751:4754, 1/L5/4879:4883, 1/L5/4936:4948 | No text annotation | homologous J3_8GLP_036 NA | |
| J3_9RU7_020 | 1/L7/9:14, 1/L7/65:67, 1/L7/108:110 | No text annotation | ||
| J3_9RU7_021 | 1/L8/44:45, 1/L8/58:64, 1/L8/95:99 | No text annotation | homologous J3_8GLP_039 J3_01004.4 | |
| J3_9RU7_022 | 1/S2/40:41, 1/S2/481:487, 1/S2/512:514 | No text annotation | geometric J3_8GLP_040 J3_58657.4 | |
| J3_9RU7_023 | 1/S2/40:47, 1/S2/479:487, 1/S2/512:514 | No text annotation | homologous J3_9PN5_028 J3_63856.4 | |
| J3_9RU7_024 | 1/S2/682:685, 1/S2/917:922, 1/S2/1022:1023 | No text annotation | ||
| J3_9RU7_025 | 1/S2/682:685, 1/S2/917:923, 1/S2/1019:1023 | No text annotation | ||
| J3_9RU7_026 | 1/S2/816:819, 1/S2/829:831, 1/S2/843:848 | No text annotation | homologous J3_9PN5_032 J3_97642.5 | |
| J3_9RU7_027 | 1/S2/938:941, 1/S2/985:993, 1/S2/1000:1004 | No text annotation | homologous J3_9PN5_033 NA | |
| J3_9RU7_028 | 1/S2/1094:1096, 1/S2/1136:1140, 1/S2/1147:1151 | No text annotation | ||
| J3_9RU7_029 | 1/S2/1218:1221, 1/S2/1645:1651, 1/S2/1673:1680 | No text annotation | homologous J3_9PN5_035 J3_85722.4 | |
| J3_9RU7_030 | 1/S2/1225:1228, 1/S2/1530:1532, 1/S2/1638:1641 | No text annotation | homologous J3_9PN5_036 J3_44359.4 | |
| J3_9RU7_031 | 1/S2/1237:1244, 1/S2/1255:1266, 1/S2/1516:1520 | No text annotation | homologous J3_9PN5_037 J3_88451.4 | |
| J3_9RU7_032 | 1/S2/1272:1277, 1/S2/1320:1324, 1/S2/1504:1510 | No text annotation | homologous J3_9H3G_038 J3_87797.4 | |
| J3_9RU7_033 | 1/S2/1340:1345, 1/S2/1384:1389, 1/S2/1481:1486 | No text annotation | homologous J3_9H3G_039 NA | |
| J3_9RU7_034 | 1/S2/1350:1351, 1/S2/1360:1363, 1/S2/1375:1379 | No text annotation | homologous J3_9PN5_040 J3_76043.7 | |
| J3_9RU7_035 | 1/S2/1391:1395, 1/S2/1450:1458, 1/S2/1467:1479 | No text annotation | ||
| J3_9RU7_036 | 1/S2/1532:1536, 1/S2/1597:1604, 1/S2/1635:1638 | No text annotation | homologous J3_9PN5_043 J3_03192.4 | |
| J4_9RU7_001 | 1/L5/111:112, 1/L5/278:283, 1/L5/304:310, 1/L5/327:330 | No text annotation | homologous J4_8GLP_001 J4_94698.4 | |
| J4_9RU7_002 | 1/L5/2365:2371, 1/L5/2389:2391, 1/L5/2824:2829, 1/L5/3856:3857 | No text annotation | homologous J4_8GLP_004 NA | |
| J4_9RU7_003 | 1/L5/2406:2410, 1/L5/2434:2439, 1/L5/2538:2539, 1/L5/2777:2784 | No text annotation | homologous J4_8GLP_005 J4_77353.2 | |
| J4_9RU7_004 | 1/L5/2409:2410, 1/L5/2434:2439, 1/L5/2538:2539, 1/L5/2777:2783 | No text annotation | homologous J4_8GLP_006 J4_48150.2 | |
| J4_9RU7_005 | 1/L5/2618:2619, 1/L5/2637:2642, 1/L5/2692:2698, 1/L5/2718:2719 | No text annotation | homologous J4_8GLP_008 NA | |
| J4_9RU7_006 | 1/L5/3634:3638, 1/L5/3650:3654, 1/L5/3690:3694, 1/L5/3821:3826 | No text annotation | homologous J4_9PN5_006 J4_78485.4 | |
| J4_9RU7_007 | 1/L5/3696:3698, 1/L5/3752:3753, 1/L5/3771:3780, 1/L5/3814:3819 | No text annotation | homologous J4_8GLP_010 J4_21738.2 | |
| J4_9RU7_008 | 1/L5/4231:4235, 1/L5/4289:4291, 1/L5/4318:4319, 1/L5/4328:4330 | No text annotation | homologous J4_8GLP_011 NA | |
| J4_9RU7_009 | 1/L5/4587:4590, 1/L5/4620:4621, 1/L5/4676:4678, 1/L5/4712:4715 | No text annotation | homologous J4_8GLP_013 J4_69783.1 | |
| J4_9RU7_010 | 1/S2/98:106, 1/S2/355:357, 1/S2/405:409, 1/S2/431:432 | No text annotation | homologous J4_9PN5_010 J4_15241.5 | |
| J4_9RU7_011 | 1/S2/671:673, 1/S2/1032:1037, 1/S2/1078:1089, 1/S2/1160:1161 | No text annotation | homologous J4_9PN5_011 J4_14595.4 | |
| J5_9RU7_001 | 1/L5/19:21, 1/L8/35:42, 1/L8/101:106, 1/L8/113:114, 1/L8/136:138 | No text annotation | homologous J5_8GLP_001 J5_27223.4 | |
| J5_9RU7_002 | 1/L5/1335:1340, 1/L5/1516:1519, 1/L5/1658:1661, 1/L5/2288:2290, 1/L5/2345:2351 | No text annotation | homologous J5_9PN5_002 J5_08384.4 | |
| J5_9RU7_003 | 1/L5/2855:2863, 1/L5/2887:2888, 1/L5/3613:3614, 1/L5/3618:3626, 1/L5/3835:3837 | No text annotation | homologous J5_8GLP_003 J5_99177.4 | |
| J5_9RU7_004 | 1/L5/3903:3910, 1/L5/4392:4400, 1/L5/4444:4453, 1/L5/4528:4534, 1/L5/4552:4557 | No text annotation | ||
| J5_9RU7_005 | 1/L5/3920:3923, 1/L5/4188:4191, 1/L5/4204:4205, 1/L5/4227:4228, 1/L5/4375:4381 | No text annotation | homologous J5_9H3G_006 J5_96125.4 | |
| J5_9RU7_006 | 1/S2/30:34, 1/S2/521:527, 1/S2/558:563, 1/S2/592:595, 1/S2/641:644 | No text annotation | homologous J5_9PN5_007 J5_04786.3 | |
| J5_9RU7_007 | 1/S2/30:34, 1/S2/521:527, 1/S2/558:565, 1/S2/585:595, 1/S2/641:644 | No text annotation | ||
| J5_9RU7_008 | 1/S2/53:56, 1/S2/89:96, 1/S2/434:436, 1/S2/457:459, 1/S2/470:474 | No text annotation | homologous J5_9PN5_009 J5_58574.4 | |
| J6_9RU7_001 | 1/L5/21:26, 1/L5/57:67, 1/L5/74:78, 1/L5/105:109, 1/L5/332:339, 1/L8/33:35 | No text annotation | ||
| J6_9RU7_002 | 1/L5/1352:1355, 1/L5/1384:1388, 1/L5/1395:1399, 1/L5/1418:1421, 1/L5/1464:1466, 1/L5/1499:1504 | No text annotation | homologous J6_8GLP_002 NA | |
| J6_9RU7_003 | 1/L5/3920:3923, 1/L5/4188:4191, 1/L5/4204:4205, 1/L5/4227:4230, 1/L5/4331:4342, 1/L5/4370:4381 | No text annotation | ||
| J7_9RU7_001 | 1/L5/1666:1671, 1/L5/1684:1685, 1/L5/1852:1855, 1/L5/1879:1884, 1/L5/1895:1899, 1/L5/2077:2078, 1/L5/2278:2283 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J4_9RU7_012 | tRNA junction |
Coloring options: