IL_9RU7_034

3D structure

PDB id

9RU7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT-HEK 80S ribosome bound to Kozak mRNA (WT-Kozak)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

9RU7|1|L5|A|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RU7_034 not in the Motif Atlas

Homologous match to IL_9PN5_023

Geometric discrepancy: 0.0629

The information below is about IL_9PN5_023

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

188

Unit IDs

9RU7|1|L5|C|1467
9RU7|1|L5|C|1468
*
9RU7|1|L5|G|1496
9RU7|1|L5|A|1497
9RU7|1|L5|G|1498

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LQ

60S ribosomal protein L18

Chain La

Large ribosomal subunit protein uL15

Chain Lb

Large ribosomal subunit protein eL29