IL_9RU7_097

3D structure

PDB id

9RU7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT-HEK 80S ribosome bound to Kozak mRNA (WT-Kozak)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

C(5MC)AAAUGCCUC(OMG)*(OMC)GCG

Length

16 nucleotides

Bulged bases

9RU7|1|L5|A|3785, 9RU7|1|L5|C|3791, 9RU7|1|L5|C|3810

QA status

Modified nucleotides: 5MC, OMG, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RU7|1|L5|C|3781
9RU7|1|L5|5MC|3782
9RU7|1|L5|A|3783
9RU7|1|L5|A|3784
9RU7|1|L5|A|3785
9RU7|1|L5|U|3786
9RU7|1|L5|G|3787
9RU7|1|L5|C|3788
9RU7|1|L5|C|3789
9RU7|1|L5|U|3790
9RU7|1|L5|C|3791
9RU7|1|L5|OMG|3792
*
9RU7|1|L5|OMC|3808
9RU7|1|L5|G|3809
9RU7|1|L5|C|3810
9RU7|1|L5|G|3811

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Ln

60S ribosomal protein L41

Chain S2

Small subunit ribosomal RNA; SSU rRNA