IL_9RU8_017

3D structure

PDB id

9RU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT-HEK 80S ribosome bound to TISU mRNA (WT-TISU)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGCG*UCG

Length

7 nucleotides

Bulged bases

9RU8|1|L5|G|448

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RU8_017 not in the Motif Atlas

Geometric match to IL_8B0X_177

Geometric discrepancy: 0.1865

The information below is about IL_8B0X_177

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9RU8|1|L5|C|447
9RU8|1|L5|G|448
9RU8|1|L5|C|449
9RU8|1|L5|G|450
*
9RU8|1|L5|U|1297
9RU8|1|L5|C|1298
9RU8|1|L5|G|1299

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Le

60S ribosomal protein L32

Chain Lf

Large ribosomal subunit protein eL33