IL_9RU8_052

3D structure

PDB id

9RU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT-HEK 80S ribosome bound to TISU mRNA (WT-TISU)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAAGC*GUGGAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RU8_052 not in the Motif Atlas

Geometric match to IL_7A0S_018

Geometric discrepancy: 0.1857

The information below is about IL_7A0S_018

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_29495.2

Basepair signature

cWW-tSH-tSH-tHS-tHS-cWW

Number of instances in this motif group

7

Unit IDs

9RU8|1|L5|C|1551
9RU8|1|L5|G|1552
9RU8|1|L5|A|1553
9RU8|1|L5|A|1554
9RU8|1|L5|G|1555
9RU8|1|L5|C|1556
*
9RU8|1|L5|G|1571
9RU8|1|L5|U|1572
9RU8|1|L5|G|1573
9RU8|1|L5|G|1574
9RU8|1|L5|A|1575
9RU8|1|L5|G|1576

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

Large ribosomal subunit protein uL2

Chain LR

60S ribosomal protein L19

Chain Lp

Large ribosomal subunit protein eL43