IL_9RU9_136

3D structure

PDB id

9RU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPS26dC HEK mutant 80S ribosome bound to Kozak mRNA (RPS26dC-Kozak)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

CAUUG*CCAAGCG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RU9|1|L5|C|4466
9RU9|1|L5|A|4467
9RU9|1|L5|U|4468
9RU9|1|L5|U|4469
9RU9|1|L5|G|4470
*
9RU9|1|L5|C|4485
9RU9|1|L5|C|4486
9RU9|1|L5|A|4487
9RU9|1|L5|A|4488
9RU9|1|L5|G|4489
9RU9|1|L5|C|4490
9RU9|1|L5|G|4491

Current chains

Chain L5

23S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LH

60S ribosomal protein L9

Chain LO

60S ribosomal protein L13a

Chain LV

60S ribosomal protein L23

Chain Lm

Ubiquitin-ribosomal protein eL40 fusion protein