IL_9RUA_017

3D structure

PDB id

9RUA (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPS26dC HEK mutant 80S ribosome bound to TISU mRNA (RPS26dC-TISU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGCG*UCG

Length

7 nucleotides

Bulged bases

9RUA|1|L5|G|448

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RUA_017 not in the Motif Atlas

Geometric match to IL_3GM7_002

Geometric discrepancy: 0.1765

The information below is about IL_3GM7_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9RUA|1|L5|C|447
9RUA|1|L5|G|448
9RUA|1|L5|C|449
9RUA|1|L5|G|450
*
9RUA|1|L5|U|1297
9RUA|1|L5|C|1298
9RUA|1|L5|G|1299

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Le

Large ribosomal subunit protein eL32

Chain Lf

Large ribosomal subunit protein eL33