IL_9RUA_031

3D structure

PDB id

9RUA (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPS26dC HEK mutant 80S ribosome bound to TISU mRNA (RPS26dC-TISU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RUA_031 not in the Motif Atlas

Geometric match to IL_9AXU_024

Geometric discrepancy: 0.368

The information below is about IL_9AXU_024

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_37129.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

57

Unit IDs

9RUA|1|L5|G|740
9RUA|1|L5|C|741
9RUA|1|L5|G|742
*
9RUA|1|L5|C|922
9RUA|1|L5|C|923

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LM

60S ribosomal protein L14