IL_9RUA_225

3D structure

PDB id

9RUA (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPS26dC HEK mutant 80S ribosome bound to TISU mRNA (RPS26dC-TISU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUG*CCU

Length

7 nucleotides

Bulged bases

9RUA|1|S2|U|1326

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RUA_225 not in the Motif Atlas

Geometric match to IL_8GLP_236

Geometric discrepancy: 0.2239

The information below is about IL_8GLP_236

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9RUA|1|S2|G|1324
9RUA|1|S2|G|1325
9RUA|1|S2|U|1326
9RUA|1|S2|G|1327
*
9RUA|1|S2|C|1502
9RUA|1|S2|C|1503
9RUA|1|S2|U|1504

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SK

Small ribosomal subunit protein eS10

Chain Sd

40S ribosomal protein S29