IL_9RUC_097

3D structure

PDB id

9RUC (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT-HEK 80S ribosome bound to H2B mRNA (WT-H2B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

C(5MC)AA(A2M)UGCCUC(OMG)*(OMC)GCG

Length

16 nucleotides

Bulged bases

9RUC|1|L5|A2M|3785, 9RUC|1|L5|C|3791, 9RUC|1|L5|C|3810

QA status

Modified nucleotides: 5MC, A2M, OMG, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RUC_097 not in the Motif Atlas

Homologous match to IL_9PN5_087

Geometric discrepancy: 0.0495

The information below is about IL_9PN5_087

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.4

Basepair signature

cWW-L-tHH-cHW-cWW-L-L-R-L

Number of instances in this motif group

10

Unit IDs

9RUC|1|L5|C|3781
9RUC|1|L5|5MC|3782
9RUC|1|L5|A|3783
9RUC|1|L5|A|3784
9RUC|1|L5|A2M|3785
9RUC|1|L5|U|3786
9RUC|1|L5|G|3787
9RUC|1|L5|C|3788
9RUC|1|L5|C|3789
9RUC|1|L5|U|3790
9RUC|1|L5|C|3791
9RUC|1|L5|OMG|3792
*
9RUC|1|L5|OMC|3808
9RUC|1|L5|G|3809
9RUC|1|L5|C|3810
9RUC|1|L5|G|3811

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Ln

60S ribosomal protein L41

Chain S2

Small subunit ribosomal RNA; SSU rRNA