IL_9RUC_112

3D structure

PDB id

9RUC (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT-HEK 80S ribosome bound to H2B mRNA (WT-H2B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

9RUC|1|L5|U|4437

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RUC_112 not in the Motif Atlas

Homologous match to IL_9H3G_119

Geometric discrepancy: 0.0697

The information below is about IL_9H3G_119

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36931.5

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

29

Unit IDs

9RUC|1|L5|G|4405
9RUC|1|L5|U|4406
9RUC|1|L5|G|4407
*
9RUC|1|L5|U|4435
9RUC|1|L5|U|4436
9RUC|1|L5|U|4437
9RUC|1|L5|U|4438
9RUC|1|L5|U|4439

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LI

Large ribosomal subunit protein uL16