IL_9RUC_123
3D structure
- PDB id
- 9RUC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- WT-HEK 80S ribosome bound to H2B mRNA (WT-H2B)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- CUCAGUAC*GGAACCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9RUC_123 not in the Motif Atlas
- Homologous match to IL_8GLP_159
- Geometric discrepancy: 0.0911
- The information below is about IL_8GLP_159
- Detailed Annotation
- Sarcin-Ricin target in LSU H95; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_34443.2
- Basepair signature
- cWW-L-R-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
9RUC|1|L5|C|4596
9RUC|1|L5|U|4597
9RUC|1|L5|C|4598
9RUC|1|L5|A|4599
9RUC|1|L5|G|4600
9RUC|1|L5|U|4601
9RUC|1|L5|A|4602
9RUC|1|L5|C|4603
*
9RUC|1|L5|G|4608
9RUC|1|L5|G|4609
9RUC|1|L5|A|4610
9RUC|1|L5|A|4611
9RUC|1|L5|C|4612
9RUC|1|L5|C|4613
9RUC|1|L5|G|4614
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LB
- Large ribosomal subunit protein uL3
- Chain LH
- Large ribosomal subunit protein uL6
- Chain LV
- 60S ribosomal protein L23
Coloring options: