IL_9RUC_166

3D structure

PDB id

9RUC (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT-HEK 80S ribosome bound to H2B mRNA (WT-H2B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UAUCAA*UGACCACG

Length

14 nucleotides

Bulged bases

9RUC|1|S2|U|361, 9RUC|1|S2|C|399, 9RUC|1|S2|C|400

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RUC|1|S2|U|359
9RUC|1|S2|A|360
9RUC|1|S2|U|361
9RUC|1|S2|C|362
9RUC|1|S2|A|363
9RUC|1|S2|A|364
*
9RUC|1|S2|U|396
9RUC|1|S2|G|397
9RUC|1|S2|A|398
9RUC|1|S2|C|399
9RUC|1|S2|C|400
9RUC|1|S2|A|401
9RUC|1|S2|C|402
9RUC|1|S2|G|403

Current chains

Chain S2

18S rRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain SI

40S ribosomal protein S8

Chain SL

Small ribosomal subunit protein uS17

Chain SX

40S ribosomal protein S23