IL_9RUC_213

3D structure

PDB id

9RUC (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT-HEK 80S ribosome bound to H2B mRNA (WT-H2B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GCG*CGUC

Length

7 nucleotides

Bulged bases

9RUC|1|S2|G|1431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RUC_213 not in the Motif Atlas

Geometric match to IL_9PN5_007

Geometric discrepancy: 0.1352

The information below is about IL_9PN5_007

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9RUC|1|S2|G|1411
9RUC|1|S2|C|1412
9RUC|1|S2|G|1413
*
9RUC|1|S2|C|1430
9RUC|1|S2|G|1431
9RUC|1|S2|U|1432
9RUC|1|S2|C|1433

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SQ

40S ribosomal protein S16

Chain ST

40S ribosomal protein S19