IL_9RVC_006

3D structure

PDB id

9RVC (explore in PDB, NAKB, or RNA 3D Hub)

Description

staphylococcus aureus 70S initiation complex with natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAA*UUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RVC_006 not in the Motif Atlas

Geometric match to IL_4K27_001

Geometric discrepancy: 0.244

The information below is about IL_4K27_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

38

Unit IDs

9RVC|1|A|C|68
9RVC|1|A|G|69
9RVC|1|A|A|70
9RVC|1|A|A|71
*
9RVC|1|A|U|98
9RVC|1|A|U|99
9RVC|1|A|A|100
9RVC|1|A|G|101

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

Small ribosomal subunit protein bS20