3D structure

PDB id
9RVC (explore in PDB, NAKB, or RNA 3D Hub)
Description
staphylococcus aureus 70S initiation complex with natural mRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
GUGAAAGCCCACG*CGUGGAGGGUC
Length
24 nucleotides
Bulged bases
9RVC|1|A|A|637, 9RVC|1|A|U|641
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9RVC|1|A|G|612
9RVC|1|A|U|613
9RVC|1|A|G|614
9RVC|1|A|A|615
9RVC|1|A|A|616
9RVC|1|A|A|617
9RVC|1|A|G|618
9RVC|1|A|C|619
9RVC|1|A|C|620
9RVC|1|A|C|621
9RVC|1|A|A|622
9RVC|1|A|C|623
9RVC|1|A|G|624
*
9RVC|1|A|C|632
9RVC|1|A|G|633
9RVC|1|A|U|634
9RVC|1|A|G|635
9RVC|1|A|G|636
9RVC|1|A|A|637
9RVC|1|A|G|638
9RVC|1|A|G|639
9RVC|1|A|G|640
9RVC|1|A|U|641
9RVC|1|A|C|642

Current chains

Chain A
16S rRNA

Nearby chains

Chain D
Small ribosomal subunit protein uS4
Chain H
Small ribosomal subunit protein uS8
Chain P
Small ribosomal subunit protein bS16
Chain Q
Small ribosomal subunit protein uS17

Coloring options:

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