3D structure

PDB id
9RVC (explore in PDB, NAKB, or RNA 3D Hub)
Description
staphylococcus aureus 70S initiation complex with natural mRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
UACAAAG*CCAUAAAG
Length
15 nucleotides
Bulged bases
9RVC|1|A|U|1297
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9RVC|1|A|U|1258
9RVC|1|A|A|1259
9RVC|1|A|C|1260
9RVC|1|A|A|1261
9RVC|1|A|A|1262
9RVC|1|A|A|1263
9RVC|1|A|G|1264
*
9RVC|1|A|C|1294
9RVC|1|A|C|1295
9RVC|1|A|A|1296
9RVC|1|A|U|1297
9RVC|1|A|A|1298
9RVC|1|A|A|1299
9RVC|1|A|A|1300
9RVC|1|A|G|1301

Current chains

Chain A
16S rRNA

Nearby chains

Chain G
Small ribosomal subunit protein uS7
Chain I
Small ribosomal subunit protein uS9
Chain N
Small ribosomal subunit protein uS14B
Chain j
Small ribosomal subunit protein uS10

Coloring options:

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