IL_9RVC_052

3D structure

PDB id

9RVC (explore in PDB, NAKB, or RNA 3D Hub)

Description

staphylococcus aureus 70S initiation complex with natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAAA*UCAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RVC_052 not in the Motif Atlas

Geometric match to IL_8B0X_055

Geometric discrepancy: 0.1489

The information below is about IL_8B0X_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87767.4

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9RVC|1|A|C|1270
9RVC|1|A|G|1271
9RVC|1|A|A|1272
9RVC|1|A|A|1273
9RVC|1|A|A|1274
*
9RVC|1|A|U|1283
9RVC|1|A|C|1284
9RVC|1|A|A|1285
9RVC|1|A|A|1286
9RVC|1|A|G|1287

Current chains

Chain A

16S rRNA

Nearby chains

Chain S

Small ribosomal subunit protein uS19