IL_9RVC_053

3D structure

PDB id

9RVC (explore in PDB, NAKB, or RNA 3D Hub)

Description

staphylococcus aureus 70S initiation complex with natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RVC_053 not in the Motif Atlas

Homologous match to IL_6CZR_164

Geometric discrepancy: 0.1458

The information below is about IL_6CZR_164

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RVC|1|A|C|1314
9RVC|1|A|G|1315
9RVC|1|A|G|1316
9RVC|1|A|A|1317
9RVC|1|A|U|1318
9RVC|1|A|U|1319
*
9RVC|1|A|A|1340
9RVC|1|A|U|1341
9RVC|1|A|G|1342
9RVC|1|A|A|1343
9RVC|1|A|A|1344
9RVC|1|A|G|1345

Current chains

Chain A

16S rRNA

Nearby chains

Chain M

Small ribosomal subunit protein uS13