IL_9RVC_060
3D structure
- PDB id
- 9RVC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- staphylococcus aureus 70S initiation complex with natural mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UAAC*GGGA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9RVC_060 not in the Motif Atlas
- Geometric match to IL_9H3G_114
- Geometric discrepancy: 0.1355
- The information below is about IL_9H3G_114
- Detailed Annotation
- Tandem non-canonical cWW pairs with external base triple
- Broad Annotation
- Tandem non-canonical cWW pairs with external base triple
- Motif group
- IL_15225.4
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 38
Unit IDs
9RVC|1|A|U|1435
9RVC|1|A|A|1436
9RVC|1|A|A|1437
9RVC|1|A|C|1438
*
9RVC|1|A|G|1485
9RVC|1|A|G|1486
9RVC|1|A|G|1487
9RVC|1|A|A|1488
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain L
- Small ribosomal subunit protein uS12
- Chain U
- Large ribosomal subunit protein uL14
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: